HIV Target gene Detail Information

> CCDC18 Gene Search Result

Gene Information

Gene Name	CCDC18
Gene ID	343099
Gene Full Name	coiled-coil domain containing 18
Gene Alias	NY-SAR-41
Transcripts	ENSG00000122483
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;Cytosol;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q5T9S5
HGNC ID	HGNC:30370
VEGA ID	OTTHUMG00000010598
String ID	9606.ENSP00000383808
PharmGKB ID	PA142672178

Target gene [CCDC18] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4008302	chr1	11	4		15	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of CCDC18 expression and immune infiltrating cell level correlation result in HIV+ samples
CCDC18 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of CCDC18 expression and immune infiltrating cell level correlation result in HIV+ samples
CCDC18 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).