HIV Target gene Detail Information

> CARD16 Gene Search Result

Gene Information

Gene Name	CARD16
Gene ID	114769
Gene Full Name	caspase recruitment domain family member 16
Gene Alias	COP; COP1; PSEUDO-ICE
Transcripts	ENSG00000204397
Virus	HIV
Gene Type	protein coding
HPA Location Info	Mitochondria;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q5EG05
HGNC ID	HGNC:33701
VEGA ID	OTTHUMG00000166157
OMIM ID	615680
String ID	9606.ENSP00000364858
PharmGKB ID	PA164717628

Target gene [CARD16] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4006357	chr11	25			25	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of CARD16 expression and immune infiltrating cell level correlation result in HIV+ samples
CARD16 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of CARD16 expression and immune infiltrating cell level correlation result in HIV+ samples
CARD16 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).