HIV Target gene Detail Information

> CAB39 Gene Search Result

Gene Information

Gene Name	CAB39
Gene ID	51719
Gene Full Name	calcium binding protein 39
Gene Alias	MO25; CGI-66
Transcripts	ENSG00000135932
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoli fibrillar center;Cytosol;
HPA Protein Class Info	Plasma proteins, Predicted intracellular proteins
Uniport_ID	Q9Y376
HGNC ID	HGNC:20292
VEGA ID	OTTHUMG00000133220
OMIM ID	612174
String ID	9606.ENSP00000258418
PharmGKB ID	PA128394663

Target gene [CAB39] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4000217	chr2	570	54	88	712	View
4002030	chr2	112	2	2	116	View
4005612	chr2	31			31	View
4010418	chr2	5	2	2	9	View
4014200	chr2	2			2	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of CAB39 expression and immune infiltrating cell level correlation result in HIV+ samples
CAB39 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of CAB39 expression and immune infiltrating cell level correlation result in HIV+ samples
CAB39 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).