HIV Target gene Detail Information

> C9orf78 Gene Search Result

Gene Information

Gene Name	C9orf78
Gene ID	51759
Gene Full Name	chromosome 9 open reading frame 78
Gene Alias	CSU2; HCA59; HSPC220; bA409K20.3
Transcripts	ENSG00000136819
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q9NZ63
HGNC ID	HGNC:24932
VEGA ID	OTTHUMG00000020796
String ID	9606.ENSP00000361524
PharmGKB ID	PA134929438

Target gene [C9orf78] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4002897	chr9	76			76	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of C9orf78 expression and immune infiltrating cell level correlation result in HIV+ samples
C9orf78 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).