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HPV Target gene Detail Information

> C6orf58 Gene Search Result


Gene Information
Gene Name C6orf58
Gene ID 352999
Gene Full Name chromosome 6 open reading frame 58
Gene Alias LEG1
Transcripts ENSG00000184530
Virus HPV
Gene Type protein coding
HPA Location Info
HPA Protein Class Info Predicted secreted proteins
Uniport_ID Q6P5S2
HGNC ID HGNC:20960
VEGA ID OTTHUMG00000015530
String ID 9606.ENSP00000328069
PharmGKB ID PA134881952
Target gene [C6orf58] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5201502 chr6 2 2 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE140662 (GEO) Condyloma Acuminatum 8 Condyloma acuminata (HPV+)(5), Skin(3)
GSE55546 (GEO) Oropharyngeal squamous cell carcinoma 16 Oropharyngeal cancers (HPV+)(12), Normal (4)
GSE55544 (GEO) Oropharyngeal squamous cell carcinoma 23 Oropharyngeal cancers HPV Active (11), Oropharyngeal cancers HPV Inactive (4), Oropharyngeal cancers HPV Negative (8)
GSE55542 (GEO) Oropharyngeal squamous cell carcinoma 36 Oropharyngeal cancers HPV Active (12), Oropharyngeal cancers HPV Inactive (8), Oropharyngeal cancers HPV Negative (16)
HNSC (TCGA) Head and Neck squamous cell carcinoma 566 Head and Neck squamous cell carcinoma(HPV-)(483),Head and Neck squamous cell carcinoma(HPV+)(39),Paracancerous(HPV-)(44)

> Dataset: GSE140662

HeatMap of cell type fractions in all samples Lollipop of C6orf58 expression and immune infiltrating cell level correlation result in HPV+ samples
C6orf58 expression: Low -> High

> Dataset: GSE55546

HeatMap of cell type fractions in all samples Lollipop of C6orf58 expression and immune infiltrating cell level correlation result in HPV+ samples
C6orf58 expression: Low -> High

> Dataset: GSE55544

HeatMap of cell type fractions in all samples Lollipop of C6orf58 expression and immune infiltrating cell level correlation result in HPV+ samples
C6orf58 expression: Low -> High

> Dataset: GSE55542

HeatMap of cell type fractions in all samples Lollipop of C6orf58 expression and immune infiltrating cell level correlation result in HPV+ samples
C6orf58 expression: Low -> High

> Dataset: HNSC

HeatMap of cell type fractions in all samples Lollipop of C6orf58 expression and immune infiltrating cell level correlation result in HPV+ samples
C6orf58 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).