HIV Target gene Detail Information

> C19orf47 Gene Search Result

Gene Information

Gene Name	C19orf47
Gene ID	126526
Gene Full Name	chromosome 19 open reading frame 47
Transcripts	ENSG00000160392
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q8N9M1
HGNC ID	HGNC:26723
VEGA ID	OTTHUMG00000179028
String ID	9606.ENSP00000463159
PharmGKB ID	PA145149543

Target gene [C19orf47] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4002145	chr19	87	21	2	110	View
4014815	chr19	2			2	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of C19orf47 expression and immune infiltrating cell level correlation result in HIV+ samples
C19orf47 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).