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HBV Target gene Detail Information

> C12orf29 Gene Search Result


Gene Information
Gene Name C12orf29
Gene ID 91298
Gene Full Name chromosome 12 open reading frame 29
Transcripts ENSG00000133641
Virus HBV
Gene Type protein coding
HPA Location Info Vesicles;
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID Q8N999
HGNC ID HGNC:25322
VEGA ID OTTHUMG00000169870
String ID 9606.ENSP00000349358
PharmGKB ID PA143485359
Target gene [C12orf29] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1004370 chr12 4 79 83 View
1004372 chr12 4 79 83 View
1004377 chr12 4 79 83 View
1004378 chr12 4 79 83 View
1004379 chr12 4 79 83 View
1004380 chr12 4 79 83 View
1004381 chr12 4 79 83 View
1004383 chr12 4 79 83 View
1004384 chr12 4 79 83 View
1004416 chr12 4 78 82 View
1004794 chr12 5 64 69 View
1005826 chr12 5 42 47 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of C12orf29 expression and immune infiltrating cell level correlation result in HBV+ samples
C12orf29 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).