HIV Target gene Detail Information

> BMS1 Gene Search Result

Gene Information

Gene Name	BMS1
Gene ID	9790
Gene Full Name	BMS1, ribosome biogenesis factor
Gene Alias	ACC; BMS1L
Transcripts	ENSG00000165733
Virus	HIV
Gene Type	protein coding
HPA Location Info	Mitotic chromosome;Nucleoli;Nucleoplasm;
HPA Protein Class Info	Disease related genes, Predicted intracellular proteins
Uniport_ID	Q14692
HGNC ID	HGNC:23505
VEGA ID	OTTHUMG00000018020
OMIM ID	611448
String ID	9606.ENSP00000363642
PharmGKB ID	PA162377556

Target gene [BMS1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4002115	chr2	15	64	32	111	View
4006339	chr2	18	6	1	25	View
4009751	chr2	7	4		11	View
4009752	chr2	7	4		11	View
4012190	chr10	5			5	View
4016295	chr2				0	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of BMS1 expression and immune infiltrating cell level correlation result in HIV+ samples
BMS1 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of BMS1 expression and immune infiltrating cell level correlation result in HIV+ samples
BMS1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).