HBV Target gene Detail Information

> ATRX Gene Search Result


Gene Information
Gene Name ATRX
Gene ID 546
Gene Full Name ATRX, chromatin remodeler
Gene Alias JMS; XH2; XNP; MRX52; RAD54; RAD54L; ZNF-HX
Transcripts ENSG00000085224
Virus HBV
Gene Type protein coding
HPA Location Info Nuclear bodies;
HPA Protein Class Info Cancer-related genes, Disease related genes, Enzymes, Potential drug targets, Predicted intracellular proteins, Transcription factors
Uniport_ID P46100
HGNC ID HGNC:886
VEGA ID OTTHUMG00000022686
OMIM ID 300032
String ID 9606.ENSP00000362441
PharmGKB ID PA25179
Target gene [ATRX] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1016960 chrX 1 1 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of ATRX expression and immune infiltrating cell level correlation result in HBV+ samples
ATRX expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).