HBV Target gene Detail Information

> ATP2C1 Gene Search Result


Gene Information
Gene Name ATP2C1
Gene ID 27032
Gene Full Name ATPase secretory pathway Ca2+ transporting 1
Gene Alias HHD; BCPM; PMR1; SPCA1; hSPCA1; ATP2C1A
Transcripts ENSG00000017260
Virus HBV
Gene Type protein coding
HPA Location Info Golgi apparatus;
Membrane Info Predicted membrane proteins
HPA Protein Class Info Disease related genes, Enzymes, FDA approved drug targets, Predicted membrane proteins, Transporters
Uniport_ID P98194
HGNC ID HGNC:13211
VEGA ID OTTHUMG00000136802
OMIM ID 604384
String ID 9606.ENSP00000421326
Drugbank ID BE0000218
PharmGKB ID PA25111
Target gene [ATP2C1] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1007804 chr3 23 1 24 View
1015191 chr3 1 1 2 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of ATP2C1 expression and immune infiltrating cell level correlation result in HBV+ samples
ATP2C1 expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).