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HIV Target gene Detail Information

> ATL2 Gene Search Result


Gene Information
Gene Name ATL2
Gene ID 64225
Gene Full Name atlastin GTPase 2
Gene Alias aip-2; ARL3IP2; ARL6IP2; atlastin2
Transcripts ENSG00000119787
Virus HIV
Gene Type protein coding
HPA Location Info Endoplasmic reticulum;
Membrane Info Predicted membrane proteins
HPA Protein Class Info Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q8NHH9
HGNC ID HGNC:24047
VEGA ID OTTHUMG00000102074
OMIM ID 609368
String ID 9606.ENSP00000368237
PharmGKB ID PA164716322
Target gene [ATL2] related to VISs
DVIDChromosomeHMTFBSCASum of Overlapped RecordsDetail
4001559 chr15 5 74 72 151 View
4002320 chr15 22 42 36 100 View
4002642 chr15 4 35 47 86 View
4003187 chr2 67 67 View
4003372 chr15 9 18 36 63 View
4006376 chr2 7 18 25 View
4012811 chr2 4 4 View
4013655 chr2 1 2 3 View
Showing 1 to 8 of 8 entries
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Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE17372 (GEO) AIDS-associated lymphoma 17 AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO) HIV-infected disease 44 HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372

HeatMap of cell type fractions in all samples Lollipop of ATL2 expression and immune infiltrating cell level correlation result in HIV+ samples
ATL2 expression: Low -> High

> Dataset: GSE50834

HeatMap of cell type fractions in all samples Lollipop of ATL2 expression and immune infiltrating cell level correlation result in HIV+ samples
ATL2 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).