HIV Target gene Detail Information

> ATG2A Gene Search Result


Gene Information
Gene Name ATG2A
Gene ID 23130
Gene Full Name autophagy related 2A
Transcripts ENSG00000110046
Virus HIV
Gene Type protein coding
HPA Location Info Vesicles;Nucleoplasm;
HPA Protein Class Info Predicted intracellular proteins, Transporters
Uniport_ID Q2TAZ0
HGNC ID HGNC:29028
VEGA ID OTTHUMG00000066831
OMIM ID 616225
String ID 9606.ENSP00000366475
PharmGKB ID PA162377101
Target gene [ATG2A] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4100013 chr11 12 12 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE17372 (GEO) AIDS-associated lymphoma 17 AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO) HIV-infected disease 44 HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372

HeatMap of cell type fractions in all samples Lollipop of ATG2A expression and immune infiltrating cell level correlation result in HIV+ samples
ATG2A expression: Low -> High

> Dataset: GSE50834

HeatMap of cell type fractions in all samples Lollipop of ATG2A expression and immune infiltrating cell level correlation result in HIV+ samples
ATG2A expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).