HIV Target gene Detail Information

> ATG13 Gene Search Result

Gene Information

Gene Name	ATG13
Gene ID	9776
Gene Full Name	autophagy related 13
Gene Alias	KIAA0652; PARATARG8
Transcripts	ENSG00000175224
Virus	HIV
Gene Type	protein coding
HPA Location Info	Cytosol;Nucleoplasm;Plasma membrane;
HPA Protein Class Info	Cancer-related genes, Predicted intracellular proteins, Transporters
Uniport_ID	O75143
HGNC ID	HGNC:29091
VEGA ID	OTTHUMG00000166538
OMIM ID	615088
String ID	9606.ENSP00000432412
PharmGKB ID	PA165543187

Target gene [ATG13] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4006862	chr11	18	1	3	22	View
4009641	chr11	2	9		11	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of ATG13 expression and immune infiltrating cell level correlation result in HIV+ samples
ATG13 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).