HBV Target gene Detail Information

> ARID2 Gene Search Result


Gene Information
Gene Name ARID2
Gene ID 196528
Gene Full Name AT-rich interaction domain 2
Gene Alias CSS6; p200; BAF200
Transcripts ENSG00000189079
Virus HBV
Gene Type protein coding
HPA Location Info Nucleoplasm;Plasma membrane;
HPA Protein Class Info Cancer-related genes, Predicted intracellular proteins, Transcription factors
Gene Function Suppressor gene
Uniport_ID Q68CP9
HGNC ID HGNC:18037
VEGA ID OTTHUMG00000150487
OMIM ID 609539
String ID 9606.ENSP00000335044
PharmGKB ID PA134916396
Target gene [ARID2] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1002694 chr12 134 84 4 222 View
1003442 chr6 2 66 66 134 View
1010178 chr12 11 2 13 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of ARID2 expression and immune infiltrating cell level correlation result in HBV+ samples
ARID2 expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).