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HBV Target gene Detail Information

> ARID1B Gene Search Result


Gene Information
Gene Name ARID1B
Gene ID 57492
Gene Full Name AT-rich interaction domain 1B
Gene Alias CSS1; OSA2; 6A3-5; DAN15; MRD12; P250R; BRIGHT; BAF250B; ELD/OSA1
Transcripts ENSG00000049618
Virus HBV
Gene Type protein coding
HPA Location Info Nucleoplasm;
HPA Protein Class Info Cancer-related genes, Disease related genes, Predicted intracellular proteins, Transcription factors
Uniport_ID Q8NFD5
HGNC ID HGNC:18040
VEGA ID OTTHUMG00000015890
OMIM ID 614556
String ID 9606.ENSP00000344546
PharmGKB ID PA134909463
Target gene [ARID1B] related to VISs
DVIDChromosomeHMTFBSCASum of Overlapped RecordsDetail
1002431 chr6 244 19 12 275 View
1008638 chr6 7 6 7 20 View
1008835 chr6 8 7 4 19 View
1015080 chr6 1 2 3 View
1400540 chr6 7 3 2 12 View
1401729 chr6 244 19 12 275 View
Showing 1 to 6 of 6 entries
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Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of ARID1B expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
ARID1B expression: Low -> High
Lollipop of ARID1B expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of ARID1B expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of ARID1B expression and immune infiltrating cell level correlation result in HBV+ samples
ARID1B expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).