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EBV Target gene Detail Information

> ARHGAP19-SLIT1 Gene Search Result


Gene Information
Gene Name ARHGAP19-SLIT1
Gene ID 100533184
Gene Full Name ARHGAP19-SLIT1 readthrough (NMD candidate)
Gene Alias ARHGAP19
Virus EBV
Gene Type ncRNA
HGNC ID HGNC:48348
VEGA ID OTTHUMG00000184018
Target gene [ARHGAP19-SLIT1] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
3000056 chr10 411 18 13 442 View
3300047 chr10 116 84 5 205 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE102203 (GEO) B-cell lymphoma 9 Plasmablastic lymphomas (EBV+)(6), Plasmablastic lymphomas (EBV-)(3)
GSE100458 (GEO) Burkitt lymphoma 14 Burkitt lyphoma cell line Akata(EBV+)(2),Burkitt lyphoma cell line Akata(EBV-)(2),Burkitt lyphoma cell line Awia(EBV+)(2),Burkitt lyphoma cell line Awia(EBV-)(2),Burkitt lyphoma cell line Eli(EBV+)(1),Burkitt lyphoma cell line Eli(EBV-)(1),Burkitt lyphoma cell line Mutu(EBV+)(2),Burkitt lyphoma cell line Mutu(EBV-)(2)

> Dataset: GSE102203

HeatMap of cell type fractions in all samples Lollipop of ARHGAP19-SLIT1 expression and immune infiltrating cell level correlation result in EBV+ samples
ARHGAP19-SLIT1 expression: Low -> High

> Dataset: GSE100458

HeatMap of cell type fractions in all samples Lollipop of ARHGAP19-SLIT1 expression and immune infiltrating cell level correlation result in EBV+ samples
ARHGAP19-SLIT1 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).