HBV Target gene Detail Information

> APOL2 Gene Search Result


Gene Information
Gene Name APOL2
Gene ID 23780
Gene Full Name apolipoprotein L2
Gene Alias APOL3; APOL-II
Transcripts ENSG00000128335
Virus HBV
Gene Type protein coding
HPA Location Info
Membrane Info Predicted membrane proteins
HPA Protein Class Info Cancer-related genes, Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q9BQE5
HGNC ID HGNC:619
VEGA ID OTTHUMG00000150634
OMIM ID 607252
String ID 9606.ENSP00000249066
PharmGKB ID PA24905
Target gene [APOL2] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1004040 chr22 80 14 2 96 View
1004041 chr22 80 14 2 96 View
1004042 chr22 80 14 2 96 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of APOL2 expression and immune infiltrating cell level correlation result in HBV+ samples
APOL2 expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).