HBV Target gene Detail Information

> ANKRD29 Gene Search Result


Gene Information
Gene Name ANKRD29
Gene ID 147463
Gene Full Name ankyrin repeat domain 29
Transcripts ENSG00000154065
Virus HBV
Gene Type protein coding
HPA Location Info Nuclear bodies;Nucleoplasm;
Membrane Info Predicted membrane proteins
HPA Protein Class Info Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q8N6D5
HGNC ID HGNC:27110
VEGA ID OTTHUMG00000131875
String ID 9606.ENSP00000468354
PharmGKB ID PA134948058
Target gene [ANKRD29] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1001238 chr18 807 26 37 870 View
1002453 chr18 266 2 3 271 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of ANKRD29 expression and immune infiltrating cell level correlation result in HBV+ samples
ANKRD29 expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).