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HBV Target gene Detail Information

> ANKRD13C Gene Search Result


Gene Information
Gene Name ANKRD13C
Gene ID 81573
Gene Full Name ankyrin repeat domain 13C
Gene Alias dJ677H15.3
Transcripts ENSG00000118454
Virus HBV
Gene Type protein coding
HPA Location Info
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID Q8N6S4
HGNC ID HGNC:25374
VEGA ID OTTHUMG00000009343
OMIM ID 615125
String ID 9606.ENSP00000359982
PharmGKB ID PA142672617
Target gene [ANKRD13C] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1010594 chr1 10 1 11 View
1403501 chr1 10 1 11 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of ANKRD13C expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
ANKRD13C expression: Low -> High
Lollipop of ANKRD13C expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of ANKRD13C expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of ANKRD13C expression and immune infiltrating cell level correlation result in HBV+ samples
ANKRD13C expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).