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HTLV1 Target gene Detail Information

> ALLC Gene Search Result


Gene Information
Gene Name ALLC
Gene ID 55821
Gene Full Name allantoicase
Gene Alias ALC
Transcripts ENSG00000151360
Virus HTLV1
Gene Type protein coding
HPA Location Info
HPA Protein Class Info Predicted intracellular proteins
HGNC ID HGNC:17377
VEGA ID OTTHUMG00000151485
OMIM ID 612396
String ID 9606.ENSP00000252505
Drugbank ID BE0001602
PharmGKB ID PA24720
Target gene [ALLC] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6013141 chr2 15 5 20 View
6015018 chr2 12 3 15 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE55851 (GEO) Adult T-cell leukemia 21 Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO) HTLV-1 associated myelopathy 39 Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO) HTLV-1 associated myelopathy 35 Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851

HeatMap of cell type fractions in all samples Lollipop of ALLC expression and immune infiltrating cell level correlation result in HTLV1+ samples
ALLC expression: Low -> High

> Dataset: GSE29312

HeatMap of cell type fractions in all samples Lollipop of ALLC expression and immune infiltrating cell level correlation result in HTLV1+ samples
ALLC expression: Low -> High

> Dataset: GSE29332

HeatMap of cell type fractions in all samples Lollipop of ALLC expression and immune infiltrating cell level correlation result in HTLV1+ samples
ALLC expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).