HIV Target gene Detail Information

> AFG3L1P Gene Search Result


Gene Information
Gene Name AFG3L1P
Gene ID 172
Gene Alias AFG3; AFG3L1
Transcripts ENSG00000223959
Virus HIV
Gene Type pseudo
HPA Location Info
HGNC ID HGNC:314
VEGA ID OTTHUMG00000138987
OMIM ID 603020
PharmGKB ID PA24611
Target gene [AFG3L1P] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4000466 chr16 227 127 90 444 View
4010297 chr16 9 9 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE17372 (GEO) AIDS-associated lymphoma 17 AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372

HeatMap of cell type fractions in all samples Lollipop of AFG3L1P expression and immune infiltrating cell level correlation result in HIV+ samples
AFG3L1P expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).