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HIV Target gene Detail Information

> ABCF1 Gene Search Result


Gene Information
Gene Name ABCF1
Gene ID 23
Gene Full Name ATP binding cassette subfamily F member 1
Gene Alias ABC27; ABC50
Transcripts ENSG00000236149
Virus HIV
Gene Type protein coding
HPA Location Info Cytosol;
HPA Protein Class Info Plasma proteins, Predicted intracellular proteins
Uniport_ID Q8NE71
HGNC ID HGNC:70
VEGA ID OTTHUMG00000004922
OMIM ID 603429
String ID 9606.ENSP00000313603
PharmGKB ID PA24405
Target gene [ABCF1] related to VISs
DVIDChromosomeHMTFBSCASum of Overlapped RecordsDetail
4008621 chr6 6 5 3 14 View
4010920 chr6 8 8 View
4010981 chr6 8 8 View
4010982 chr6 6 2 8 View
4012504 chr6 5 5 View
Showing 1 to 5 of 5 entries
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Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE17372 (GEO) AIDS-associated lymphoma 17 AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO) HIV-infected disease 44 HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372

HeatMap of cell type fractions in all samples Lollipop of ABCF1 expression and immune infiltrating cell level correlation result in HIV+ samples
ABCF1 expression: Low -> High

> Dataset: GSE50834

HeatMap of cell type fractions in all samples Lollipop of ABCF1 expression and immune infiltrating cell level correlation result in HIV+ samples
ABCF1 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).