HIV Target gene Detail Information

> ABCF1 Gene Search Result

Gene Information

Gene Name	ABCF1
Gene ID	23
Gene Full Name	ATP binding cassette subfamily F member 1
Gene Alias	ABC27; ABC50
Transcripts	ENSG00000236149
Virus	HIV
Gene Type	protein coding
HPA Location Info	Cytosol;
HPA Protein Class Info	Plasma proteins, Predicted intracellular proteins
Uniport_ID	Q8NE71
HGNC ID	HGNC:70
VEGA ID	OTTHUMG00000004922
OMIM ID	603429
String ID	9606.ENSP00000313603
PharmGKB ID	PA24405

Target gene [ABCF1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4008621	chr6	6	5	3	14	View
4010920	chr6	8			8	View
4010981	chr6	8			8	View
4010982	chr6	6	2		8	View
4012504	chr6	5			5	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of ABCF1 expression and immune infiltrating cell level correlation result in HIV+ samples
ABCF1 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of ABCF1 expression and immune infiltrating cell level correlation result in HIV+ samples
ABCF1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).