HIV Target gene Detail Information

> ABCE1 Gene Search Result

Gene Information

Gene Name	ABCE1
Gene ID	6059
Gene Full Name	ATP binding cassette subfamily E member 1
Gene Alias	RLI; OABP; RLI1; ABC38; RNS4I; RNASEL1; RNASELI
Transcripts	ENSG00000164163
Virus	HIV
Gene Type	protein coding
HPA Location Info	Cytosol;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	P61221
HGNC ID	HGNC:69
VEGA ID	OTTHUMG00000161478
OMIM ID	601213
String ID	9606.ENSP00000296577
PharmGKB ID	PA24404

Target gene [ABCE1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4009055	chr4	13			13	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of ABCE1 expression and immune infiltrating cell level correlation result in HIV+ samples
ABCE1 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of ABCE1 expression and immune infiltrating cell level correlation result in HIV+ samples
ABCE1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).