HBV Target gene Detail Information

> ABCA10 Gene Search Result


Gene Information
Gene Name ABCA10
Gene ID 10349
Gene Full Name ATP binding cassette subfamily A member 10
Gene Alias EST698739
Transcripts ENSG00000154263
Virus HBV
Gene Type protein coding
HPA Location Info
Membrane Info Predicted membrane proteins
HPA Protein Class Info Predicted intracellular proteins, Predicted membrane proteins, Transporters
Uniport_ID Q8WWZ4
HGNC ID HGNC:30
VEGA ID OTTHUMG00000164716
OMIM ID 612508
String ID 9606.ENSP00000269081
PharmGKB ID PA24374
Target gene [ABCA10] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1009889 chr17 6 8 14 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of ABCA10 expression and immune infiltrating cell level correlation result in HBV+ samples
ABCA10 expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).