SARS_CoV_2 mutation literature information.


  Role of the Microbiome in the Pathogenesis of COVID-19.
 PMID: 35433495       2022       Frontiers in cellular and infection microbiology
Introduction: High-frequency co-occurring mutations (R203K and G204R) contributed to decreasing structural flexibility.
Table: R203K


  Plasticity in structure and assembly of SARS-CoV-2 nucleocapsid protein.
 PMID: 35169797       2022       bioRxiv
Result: The earlier R203K/G204R was shown experimentally to enhance the ability of N-protein to form condensates, and R203M - prevalent in the Delta variant - was recently reported to enhance viral replication.
Discussion: Earlier examinations of emerging mutations in N proteins, going back to June 2020, were necessarily more limited in scope, and while sufficient to examine hot spots and identify key replacements such as R203K/G204R, it was not yet possible to draw conclusions from a survey of the entire mutational landscape.


  Phylogeography and genomic epidemiology of SARS-CoV-2 in Italy and Europe with newly characterized Italian genomes between February-June 2020.
 PMID: 35388091       2022       Scientific reports
Table: R203K


  The dynamics of circulating SARS-CoV-2 lineages in Bogor and surrounding areas reflect variant shifting during the first and second waves of COVID-19 in Indonesia.
 PMID: 35341058       2022       PeerJ
Result: Unique changes were found in Indonesian lineages belonging to B.1.1.398 (N_G204R and N_R203K), B.1.470 (NSP_12_P227L) and B.1.466.2 (S_N439K and NSP6_L75F) lineages.


  Unusual N Gene Dropout and Ct Value Shift in Commercial Multiplex PCR Assays Caused by Mutated SARS-CoV-2 Strain.
 PMID: 35454022       2022       Diagnostics (Basel, Switzerland)
Discussion: According to the same tool, the frequency of the four amino acid substitutions, R203K, G204R, A208G and M234I, in 9.525.430 sequences available from the GISAID database (as of 29 March 2022, with collection days 2020-1-29, 2020-1-29, 2020-3-3, 2020-1-26 to 2022-3-29) was 44%, 43%, <0.5% and 2%, respectively.
Discussion: Sequencing analysis revealed four amino acid mutations (R203K, G204R, A208G, M234I) in the N protein sequence of all our B.1.1.318 isolates.
Discussion: The R203K and G204R amino acid changes have been found in several variants beside B.1.1.318 and are considered to contr


  Isolation and Genomic Characterization of SARS-CoV-2 Omicron Variant Obtained from Human Clinical Specimens.
 PMID: 35336868       2022       Viruses
Introduction: Omicron has posed a serious public health concern due to the mutations/deletions associated with increased binding affinity to ACE2 (S:Q498R and S:N501Y), increased transmissibility (S:H655Y, S:N679K, and S:P681H), increased viral load (N:R203K and N:G204R), innate immune evasion (ORF1a:L3674-, ORF1a:S3675-, and ORF1a:G3676), and S-gene target failure (S:H69-).


  Clinico-Genomic Analysis Reiterates Mild Symptoms Post-vaccination Breakthrough: Should We Focus on Low-Frequency Mutations?
 PMID: 35308382       2022       Frontiers in microbiology
Table: R203K
Discussion: Moreover, the mutation R203K/G204R was found to display a different protein structure morphology from the control and an enhanced intraviral interaction of R203K/G204R in the N and E proteins in molecular docking and protein structure prediction analysis.


  Identification of a novel SARS-CoV-2 variant with a truncated protein in ORF8 gene by next generation sequencing.
 PMID: 35301412       2022       Scientific reports
Table: R203K


  Comparison of SARS-CoV-2 Evolution in Paediatric Primary Airway Epithelial Cell Cultures Compared with Vero-Derived Cell Lines.
 PMID: 35215919       2022       Viruses
Result: These changes included, but were not limited to, D614G in Spike; R203K and G204K in N; and an out-of-frame deletion of five nucleotides in ORF7A, leading to its premature truncation.


  A Detailed Overview of Immune Escape, Antibody Escape, Partial Vaccine Escape of SARS-CoV-2 and Their Emerging Variants With Escape Mutations.
 PMID: 35222380       2022       Frontiers in immunology
Method: Simultaneously, some mutations such as R203K and G204R are too noted in the Omicron variant.



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