SARS_CoV_2 mutation literature information.


  Case Report: Genomic Characteristics of the First Known Case of SARS-CoV-2 Imported From Spain to Sichuan, China.
 PMID: 34917639       2021       Frontiers in medicine
Introduction: In addition, an Nsp12 mutation (P323L) and N protein double mutations (R203K and G204R) were also found.
Discussion: Siqi suggested that R203K and G204R mutations could change viral protein structure, binding affinity, and hot spots of the interface, thereby impact on SARS-CoV-2 transmission, diagnosis, and treatment of Discussion: These changes translated to four amino acid changes in three proteins: spike (D614G), Nsp12 (P323L), and N protein (R203K and G204R).


  Omicron: A Heavily Mutated SARS-CoV-2 Variant Exhibits Stronger Binding to ACE2 and Potently Escapes Approved COVID-19 Therapeutic Antibodies.
 PMID: 35140714       2021       Frontiers in immunology
Introduction: Omicron also had mutations in the other structural proteins, including Envelope (E) (T9I), Membrane (M) (D3G, Q19E, and A63T), and Nucleocapsid (N) (P13L, Delta31-33, R203K, G204R), further enhancing their infectivity.


  Mutations in SARS-CoV-2 viral RNA identified in Eastern India: Possible implications for the ongoing outbreak in India and impact on viral structure and host susceptibility.
 PMID: 32515358       2020       Journal of biosciences
Table:
Figure: (B) 28881-3 GGG/AAC (R203K and G204R)) mutations in the nucleocapside protein coding gene in Clustal Omega.
Figure: (Bottom) This panel shows the domain organization of the variant SARS-CoV-2 N-protein with mutations at position 203 and 204 (R203K, G204R).


  SARS-CoV-2 genomic surveillance in Taiwan revealed novel ORF8-deletion mutant and clade possibly associated with infections in Middle East.
 PMID: 32543353       2020       Emerging microbes & infections
Result: We further found 4 Taiwanese strains (CGMH-CGU-12, -13, -18, and -20, top four in Figure 3E) shared the same N gene mutations R203K and G204R resulting from 3 nucleotide mutations G608A, G609A, and G610C.


  Identification of the nucleotide substitutions in 62 SARS-CoV-2 sequences from Turkey.
 PMID: 32595354       2020       Turkish journal of biology
Table: G204R
Discussion: These mutations were due to nucleotide substitutions in 3 nucleotides in order where 2 of them (G28881A and G28882A) results in arginine to lysine (R203K) substitution and the third one (G28883C) results in glycine to arginine (G204R) in the nucleocapsid phosphoprotein, where both substituted amino acids differ from their original amino acids in means of their isoelectric points (Pachetti et al., 2020) (Table 1).


  Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus.
 PMID: 32697968       2020       Cell
7Figure: These base substitutions are contiguous and result two amino acid changes, including N-G204R, hence GISAID's ""GR clade"" name."


  SARS-CoV-2 genomic variations associated with mortality rate of COVID-19.
 PMID: 32699345       2020       Journal of human genetics
Result: In the cluster 2, K/R variants of N protein R203K/G204R mutations were significantly enriched at 43.1%, compared with the other clusters (5.2%, P = 0.00011 for the cluster 1 and 11.8%, P = 5.6 x 10-7 for the cluster 3; Supplementary.


  Evolutionary and structural analyses of SARS-CoV-2 D614G spike protein mutation now documented worldwide.
 PMID: 32820179       2020       Scientific reports
Introduction: For example, most strains of the D614G clade also harbor a mutation (P4715L) in orf1ab and a subclade processes three nucleotide changes in the nucleoprotein (N) gene (GGG to AAC; G204R), which plays diverse roles in virion assembly as well as genome transcription and translation.


  Molecular Epidemiology Analysis of SARS-CoV-2 Strains Circulating in Romania during the First Months of the Pandemic.
 PMID: 32823907       2020       Life (Basel, Switzerland)
Result: The frequency of R203K and G204R variants in the GISAID database mutational statistics is 23.6% (n = 12,784).
Result: The sequences from the BMA presented specific mutations: G28881A, G28882A (R203K in N gene) and G28883C (G204R in N gene).


  SARS-CoV-2 genomic and quasispecies analyses in cancer patients reveal relaxed intrahost virus evolution.
 PMID: 32869023       2020       bioRxiv
Result: Additionally, SNV signatures of previously characterized Brazilian genomes were found in most samples, such as G28881A and G28882A (98.6%; resulting in R203K change in N), G28883C (98.6%; resulting in G204R change in N), T27299C (91.6%; resulting in I33T change in ORF6), and T29148C (90.1%; resulting in I292T change in N).



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