Abstract: We analyzed longitudinal humoral responses against the D614G strain and variants of concern for SARS-CoV-2 in a cohort of SARS-CoV-2-naive and previously infected individuals who received the BNT162b2 mRNA vaccine with sixteen weeks between doses.
Introduction: For example, the mutation D614G in the S glycoprotein, which appeared very early in the pandemic, is now present in almost all circulating strains.
Result: As expected, none of the SARS-CoV-2-naive plasma samples collected at V0 were able to recognize the SARS-CoV-2 S (D614G) or any of the variants tested here (B.1.1.7, B.1.351, B.1.617.2, P.1, B.1.526) (Figures 2A-2C and S2A).
Result: As observed with the D614G
Table: D614G
Structural and functional insights into the major mutations of SARS-CoV-2 Spike RBD and its interaction with human ACE2 receptor.
PMID: 34955621
2022
Journal of King Saud University. Science
Introduction: Substitution mutations like D614G, N501Y, Y453F, N439K/R, P681H, K417N/T, and E484K, as well as deletion mutations like DeltaH69/V70 and Delta242-244 are the most common in the spike protein.
Introduction: The D614G mutation enhanced viral proliferation and transmission as compared to wild-type viruses.
COVID-19 outbreak in Malaysia: Decoding D614G mutation of SARS-CoV-2 virus isolated from an asymptomatic case in Pahang.
PMID: 34959053
2022
Journal of infection and public health
Result: The amino acid substitutions detected in both the isolates were D614G, E484K, V1176F in the spike, A119S, G204R, M234I, R203K in the N, L205V in NSP5, L71F in NSP7 and P32L in NSP 12.
Discussion: The characteristic spike mutations in P2 lineage are D614G, E484K and V1176F.
Genotype-phenotype correlation identified a novel SARS-CoV-2 variant possibly linked to severe disease.
PMID: 33506644
2022
Transboundary and emerging diseases
Abstract: Majority of sequenced strains (N = 60, 52%) were from the European cluster consistent with the higher infectivity rates associated with the D614G mutation carried by most strains in this cluster.
Result: Some mutations were more frequent than others; for example, the 241C>T, 3037C>T, 14408C>T, and the 23403A>G (also known as the D614G mutation in the S protein), were each seen in 58 of the genomes (Table S3).
Result: The predominance of European cluster is consistent with the higher infectivity rates associated with the D614G mutation carried by most strains in this cluster (Figure S1).
Discussion: Most of those strains (58/60) carried the D614G
COVID-19 outbreak in Malaysia: Decoding D614G mutation of SARS-CoV-2 virus isolated from an asymptomatic case in Pahang.
Introduction: A recent announcement by MOH revealed that five clusters in Malaysia, namely Benteng (23 viruses), Sivagangga (4 viruses), Tawar (3 viruses), Sungai (1 virus) and Bukit Tiram (1 virus); were found to display the D614G mutation in Spike protein.
Introduction: Analysis of more than 28,000 S gene sequence in May 2020 revealed that the variant carrying the D614G Spike mutation became the globally dominant form of SARS-CoV-2.
Introduction: Hence D614G genotype is likely to be more infectious, due to higher viral loads in COVID-19 patients infected with G614 variant.
Introduction: Nevertheless, it has been observed that the spike D614G subs
SARS-CoV-2 outbreak in Iran: The dynamics of the epidemic and evidence on two independent introductions.
PMID: 33835709
2022
Transboundary and emerging diseases
Result: D614G, the most prevalent mutation globally, was also the most prevalent spike mutation in viral isolates from Iran, while showing an increasing trend from mid-May, observed mostly within the [B.1.*/20A] cluster.
Result: Moreover, Sanger sequencing of additional 67 SARS-CoV2 positive samples confirmed the increase in D614G frequency till October, becoming the dominant mutation in the Iranian outbreak (Figure 5).
Result: Remarkably, co-occurrence of D614G mutation with B.4 [G1397A-T28688C-G29742T] and G11083T variants was also observed in three samples.
Result: We thus focussed on variants located in spike protein of viral isolates from Iran and id
Spike protein cleavage-activation mediated by the SARS-CoV-2 P681R mutation: a case-study from its first appearance in variant of interest (VOI) A.23.1 identified in Uganda.
Introduction: D614G/Q613H have now become established in circulating B/A lineage viruses.
Introduction: Both lineages have undergone significant diversification as they expanded; with this expansion apparently linked to a key S gene mutation D614G in lineage B and Q613H in lineage A:an apparent example of convergent evolution that resulted in a more stabilized spike protein, with D614G linked to modest increase in virus transmissibility.
Discussion: These variants appear to have expanded following the prior introduction of stabilizing mutations into the spike protein, such as D614G and Q613H.
Molecular definition of severe acute respiratory syndrome coronavirus 2 receptor-binding domain mutations: Receptor affinity versus neutralization of receptor interaction.
Result: Of the 93 substitutions that were present in 2020, 61 were no longer present during March 2021 (Figure 5C), and only 8 were present in >5% of samples during March 2021 (NSP2:T85I, NSP12:P323L, S:L5F, S:D614G, NS3aQ57H, NS8:S24L, N:R203K, and N:G204R).
Result: The most common amino acid substitutions across lineages were S:D614G, NSP12:P323L, NSP2:
Clinical characteristics of SARS-CoV-2 by re-infection vs. reactivation: a case series from Iran.
PMID: 33738620
2021
European journal of clinical microbiology & infectious diseases
Abstract: The sequencing of SARS-CoV-2 sample obtained from two cases revealed a D614G mutation of S gene from the second isolated sample strengthens the case for the re-infection.
Conclusion: Moreover, the viral sequencing also revealed a D614G mutation of S gene from the second obtained sample.
Conclusion: The viral sequencing revealed a D614G mutation of S gene from the second isolated sample.
Table: D614G
Discussion: The amino acid change in the spike protein of the virus, D614G, has emerged early during the pandemic as the viruses harboring this mutation are now dominant in many places worldwide.