SARS_CoV_2 mutation literature information.


  SARS-CoV-2 D614G variant exhibits efficient replication ex vivo and transmission in vivo.
 PMID: 33184236       2020       Science (New York, N.Y.)
Abstract: However, the D614G variant transmits significantly faster and displayed increased competitive fitness than the wild-type virus in hamsters.
Abstract: The spike aspartic acid-614 to glycine (D614G) substitution is prevalent in global severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strains, but its effects on viral pathogenesis and transmissibility remain unclear.
Abstract: These data show that the D614G substitution enhances SARS-CoV-2 infectivity, competitive fitness, and transmission in primary human cells and animal models.


  Comparison of Binding Site of Remdesivir and Its Metabolites with NSP12-NSP7-NSP8, and NSP3 of SARS CoV-2 Virus and Alternative Potential Drugs for COVID-19 Treatment.
 PMID: 33185784       2020       The protein journal
Abstract: A recent study reported that the D614G mutation in the SARS-CoV-2 virus spike protein reduces S1 shedding and increases infectivity of SARS COV-2 virus.
Introduction: It was reported that the D614G mutation reduces S1 shedding and increases infectivity.


  Copper(II) Inhibition of the SARS-CoV-2 Main Protease.
 PMID: 33200118       2020       ChemRxiv
Abstract: We also started studying the Spike Protein, PDB ID: 6VXX and the region around the D614G mutant.
Introduction: We are testing the proposal that cobalt(III) or copper(II) binding to these residues would partially unfold the protein, including the region around GLY 614 in the D614G mutant.


  Genetic diversity of SARS-CoV-2 and clinical, epidemiological characteristics of COVID-19 patients in Hanoi, Vietnam.
 PMID: 33201914       2020       PloS one
Abstract: The prevalence of the former reflected probable European origin of viruses, and the transition D614G was dominant in Vietnam.
Abstract: The three most common variants were linked, and included C3037T, C14408T (nsp12: P323L) and A23403G (S: D614G) mutations.
Discussion: Of the SARS-CoV-2 genomes from the first two patients in Vietnam (one from Wuhan who transmitted to a second case), the D614G change was not found.


  Loss of orf3b in the circulating SARS-CoV-2 strains.
 PMID: 33205709       2020       Emerging microbes & infections
R
Result: All H57 strains clustered within the clades with spike G614, indicating that this mutation has co-evolved with the D614G mutation (blue box in Figure 1A and coloured as blue in Figure 1C).
Result: Also, the Delta3b viruses contain both the orf3a Q57H substitution and D614G mutation.


  Development of CpG-adjuvanted stable prefusion SARS-CoV-2 spike antigen as a subunit vaccine against COVID-19.
 PMID: 33208827       2020       Scientific reports
Abstract: In addition, the antibodies elicited were able to cross-neutralize pseudovirus containing the spike protein of the D614G variant, indicating the potential for broad spectrum protection.
Method: Site-directed mutagenesis was used to generate the D614G variant by changing nucleotide at position 23403 (Wuhan-Hu-1 reference strain) from A
Figure: Inhibition of pseudoviruses carrying D614D (wild-type) or D614G (variant) versions of the spike protein by mice immunized with S-2P with CpG 1018 and aluminum hydroxide.


  SARS-CoV-2 spike-protein D614G mutation increases virion spike density and infectivity.
 PMID: 33243994       2020       Nature communications
Introduction: At least two groups independently noted that D614G mutation correlated with increased viral loads in COVID-19 patients, but because this change is also associated with three or four other mutations in other viral proteins including nsp3 and
Table: D614G
Figure: The D614G mutation is associated with enhanced infectivity.


  SARS-CoV-2 lineage B.6 was the major contributor to early pandemic transmission in Malaysia.
 PMID: 33253226       2020       PLoS neglected tropical diseases
Result: The mutation D614G in the spike protein, which may increase infectivity of SARS-CoV-2 and has become prevalent in many countries, was only observed in 13 (11.3%) Malaysian sequences from lineages B.1, B.1.1, B.1.1.1 and B.1.36 (S3 Table), but was not present in lineage B.6.


  Origin, evolution and global spread of SARS-CoV-2.
 PMID: 33274614       2020       Comptes rendus biologies
Abstract: These are generally neutral and have no impact on virulence and severity, but some appear to influence infectivity, notably the D614G mutation of the Spike protein.


  CD8 T cell epitope generation toward the continually mutating SARS-CoV-2 spike protein in genetically diverse human population: Implications for disease control and prevention.
 PMID: 33301503       2020       PloS one
Result: Although we identified major mutations on CD8 T cell epitopes including L5F, D614G and G1124V for the SARS-CoV-2 S protein, the detailed mechanisms driving these mutations are not known.
Result: Effect of D614G mutation on CD8 T cell epitope generation.
Result: In addition, these mutations are exclusively L to F at position 5, D to G at position 614 and G to V at position 1124.



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