Abstract: In this study, three coevolved
protease-substrate complexes (AP2VNC-p1
V82A, LP1'Fp1-
p6D30N/
N88D, and SP3'Np1-
p6D30N/
N88D) were investigated for structural and dynamic properties by molecular modeling and dynamics simulations.
Conclusion: In this study, structural properties of two drug resistant
PR variants (
V82A and
D30N/
N88D) and the substrates that coevolved with these two variants (AP2VNC-p1 and LP1'Fp1-
p6/SP3'Np1-
p6, respectively) were investigated in conformational ensembles obtained from