HIV mutation literature information.


  Cyclophilin A promotes HIV-1 reverse transcription but its effect on transduction correlates best with its effect on nuclear entry of viral cDNA.
 PMID: 24479545       2014       Retrovirology
Introduction: In addition, N74D and A105T render WT HIV-1 dependent on CypA-CA binding in H9 and HeLa cells, host cells that do not otherwise require CypA for WT HIV-1 replication.
Introduction: Interestingly, CA mutations N74D and A105T have no effect on the CA-CypA interaction, but, when encoded in cis, either mutant will rescue the infectivity defect of the A92E mutant.


  HIV-1 evades innate immune recognition through specific cofactor recruitment.
 PMID: 24196705       2013       Nature
Abstract: Here we show that HIV-1 capsid mutants N74D and P90A, which are impaired for interaction with cofactors cleavage and polyadenylation specificity factor subunit 6 (CPSF6) and cyclophilins (Nup358 and CypA), respectively, cannot replicate in primary human monocyte-derived macrophages because they trigger innate sensors leading to nuclear translocation of NF-kappaB and IRF3, the production of soluble type 1 IFN and induction of an antiviral state.
Introduction: Given that CA mutation N74D prevents recruitment of CPSF6 we hypothesized that CPSF6 depletion would induce WT HIV-1 to trigger IFN responses in MDM.
Introduction: HIV-1 capsid (CA) mutant N74D cannot recruit CPSF6 and is insens


  The V86M mutation in HIV-1 capsid confers resistance to TRIM5alpha by abrogation of cyclophilin A-dependent restriction and enhancement of viral nuclear import.
 PMID: 23448277       2013       Retrovirology
Discussion: Indeed, restriction of HIV-1 by CPSF6-358, a truncated form of the RNA processing factor, cleavage and polyadenylation specific factor 6 (CPSF6), is counteracted by the mutation N74D in CA.


  Differential effects of human immunodeficiency virus type 1 capsid and cellular factors nucleoporin 153 and LEDGF/p75 on the efficiency and specificity of viral DNA integration.
 PMID: 23097450       2013       Journal of virology
Abstract: Here, we show that CA mutations, which include the substitution of Asp for Asn74 (N74D), significantly reduce the dependency of HIV-1 on LEDGF/p75 during infection and that this difference correlates with the efficiency of viral DNA integration.
Abstract: The distribution of integration sites mapped by Illumina sequencing confirms that the N74D mutation reduces integration into gene-rich regions of chromosomes and gene bodies and reveals previously unrecognized roles for NUP153 (another HIV-1 cofactor implicated in viral nuclear import) and LEDGF/p75 in the targeting of the viral preintegration complex to gene-dense regions of chromatin.


  Human immunodeficiency virus type 1 capsid mutation N74D alters cyclophilin A dependence and impairs macrophage infection.
 PMID: 22301145       2012       Journal of virology
Abstract: HIV-1 acquires resistance to CPSF6-358 through the N74D mutation of the capsid (CA), which alters its nuclear entry pathway.
Abstract: Here we show that compared to wild-type (WT) HIV-1, N74D HIV-1 is more sensitive to cyclosporine, has increased sensitivity to nevirapine, and is impaired in macrophage infection prior to reverse transcription.
Abstract: Overall, our data indicate that N74D HIV-1 replication in transformed cells requires cyclophilin A but is dependent on other interactions in macrophages.


  HIV-1 capsid-targeting domain of cleavage and polyadenylation specificity factor 6.
 PMID: 22301135       2012       Journal of virology
Abstract: Fusion of CPSF6 residues 301 to 358 to rhesus TRIM5alpha is also sufficient to restrict wild-type but not N74D HIV-1.
Abstract: HIV-1 acquires resistance to CPSF6-358 through an N74D mutation of CA that impairs binding of the antiviral factor.


  Mutations affecting interaction of integrase with TNPO3 do not prevent HIV-1 cDNA nuclear import.
 PMID: 22176773       2011       Retrovirology
Discussion: Recently, HIV-1 CA mutant N74D was shown to escape replication restriction observed upon TNPO3 depletion.


  HIV-1 capsid-cyclophilin interactions determine nuclear import pathway, integration targeting and replication efficiency.
 PMID: 22174692       2011       PLoS pathogens
Figure: C, HIV-1 capsid mutants that are less sensitive to Nup358, Nup153 or TRN-SR2 RNAi (HIV-1 CA N57A or N74D) enter the nucleus through a different pathway that directs their integration into genome areas of lower density of transcription units.
Figure: D, Depletion of Nup358 by RNAi reduces viral nuclear entry via the Nup358-dependent pathway and the virus gains access via an Nup358-independent alternative pathway resulting in phenotypically similar integration site selection as observed for the
Discussion: Furthermore, mutations that render HIV-1 less sensitive to both Nup358 and TRN-SR2 depletion (CA N57A and N74D) both shift integration preferences to regions with lower densities of transcription units (Figure 4).


  Transportin 3 promotes a nuclear maturation step required for efficient HIV-1 integration.
 PMID: 21901095       2011       PLoS pathogens
Abstract: Depletion of Tnp3 results in a re-distribution of HIV-1 capsid proteins between nucleus and cytoplasm however HIV-1 bearing the N74D mutation in capsid, which is insensitive to Tnp3 depletion, does not show nucleocytoplasmic redistribution of capsid proteins.
Result: A different intracellular distribution of wild type and N74D  Figure: (C) Control (Scr) and Tnp3 KD HeLa cells were infected with the N74D mutant vector and analyzed by flow cytometry 24 hours later; mean values +- SD of three independent experiments are shown.


  The requirement for nucleoporin NUP153 during human immunodeficiency virus type 1 infection is determined by the viral capsid.
 PMID: 21593146       2011       Journal of virology
Abstract: Two capsid missense mutant viruses, N74D and P90A, were largely insensitive to NUP153 depletion, as was wild-type HIV-1 when cyclophilin A was depleted simultaneously or when infection was conducted in the presence of cyclosporine A.



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