Virus mutation recognition tool

ViMRT is a text-mining tool and search engine for automated virus mutation recognition based on natural language processing, specialized in virus mutation. ViMRT allows to directly download it to identify virus mutation locally refering to Docs and retrieve the close relevant information of mutation (e.g. virus gene, disease) in the web.

Virus mutation
ViMRT is a high-performance mutation tool to extract virus mutation and a search engine to obtain mutation information of 7 viruses which are included:
* Hepatitis B Virus (HBV)
* Epstein-Barr Virus (EBV)
* Human Papillomavirus Virus (HPV)
* Human Immunodeficiency Virus (HIV)
* Human T-cell Lymphotropic Virus 1 (HTLV1)
* Influenza Virus (IV)
* Severe Acute Respiratory Syndrome
Coronavirus 2 (SARS-CoV-2)

Search in Full Text
ViMRT are automatically extracted from over 9,629 PubMed abstracts as well as 3,160 PMC full-text articles, in order to provide comprehensive mutation information for related researchers to quickly and accurately search. You can download total annotated information in Dataset.

Gene and Disease
ViMRT provides key biological relations of virus mutation, gene and disease. We built the virus gene corpus from NCBI PubMed and gene database and disease corpus from CTD database, and developed Python scripts to extract the virus gene and related disease entities in sentences which contain virus mutation.

Related links: tmVar ViMIC NCBI PubMed PMC Taxnonomy CTD LitVar PubTator COSMIC