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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4004828] Location [chr5: 176974497] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 H3K36me3 39 View


> Overlapped records detail between VIS [DVID: 4004828] and all histone modification :


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM669898 HUES6 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM521890 IMR90 Fibroblast Lung H3K36me3 [Search on ENCODE]
GSM425485 MDA-MB-231 Epithelium Breast H3K36me3 [Search on ENCODE]
GSM817238 None Fibroblast Foreskin H3K36me3 [Search on ENCODE]
GSM958160 None Melanocyte Foreskin H3K36me3 [Search on ENCODE]
GSM958159 None Keratinocyte Foreskin H3K36me3 [Search on ENCODE]
GSM910569 None None Left Ventricle H3K36me3 [Search on ENCODE]
GSM621684 None None Skeletal Muscle H3K36me3 [Search on ENCODE]
GSM621461 None Adipocyte Adipose H3K36me3 [Search on ENCODE]
GSM537651 None Haematopoietic Progenitor Cell Blood H3K36me3 [Search on ENCODE]
GSM1102788 None Monocyte Blood H3K36me3 [Search on ENCODE]
GSM956012 H1 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM1058772 None Epithelium Fetal Small Intestine H3K36me3 [Search on ENCODE]
GSM1058773 None None Fetal Muscle Leg H3K36me3 [Search on ENCODE]
GSM1160196 None None Fetal Adrenal Gland H3K36me3 [Search on ENCODE]
GSM1160195 None None Fetal Muscle Trunk H3K36me3 [Search on ENCODE]
GSM941739 None Keratinocyte Foreskin H3K36me3 [Search on ENCODE]
GSM1127070 UCSF-4* Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM1055820 IMR90 Fibroblast Lung H3K36me3 [Search on ENCODE]
GSM1055821 IMR90 Fibroblast Lung H3K36me3 [Search on ENCODE]
GSM1220566 None None Fetal Spinal Cord H3K36me3 [Search on ENCODE]
GSM1233900 GM12878 B Lymphocyte Blood H3K36me3 [Search on ENCODE]
GSM1233942 GM12891 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1233965 GM12892 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234068 GM19193 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1314124 KOPT-K1 T Lymphocyte Blood H3K36me3 [Search on ENCODE]
GSM1314145 DND-41 T Lymphocyte Blood H3K36me3 [Search on ENCODE]
GSM945233 None Endothelial Cell Umbilical Vein H3K36me3 [Search on ENCODE]
GSM1003562 None Monocyte Blood H3K36me3 [Search on ENCODE]
GSM1252284 None None Stomach H3K36me3 [Search on ENCODE]
GSM767346 H1 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM772820 None Mesenchymal Stem Cell Adipose H3K36me3 [Search on ENCODE]
GSM772846 None iPSC None H3K36me3 [Search on ENCODE]
GSM2042910 HT29 colorectal adenocarcinoma None H3K36me3 [Search on ENCODE]
GSM2042909 HT29 colorectal adenocarcinoma None H3K36me3 [Search on ENCODE]
GSM2279165 HEK293 Epithelium Embryonic Kidney H3K36me3 [Search on ENCODE]
GSM2258691 76NF2V None Breast H3K36me3 [Search on ENCODE]
GSM466737 H1 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM2258834 HCC1954 None Breast H3K36me3 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.