HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."

Show overlaps from virus related biological source

Factor Rank on this VIS	Factor Name	Overlapped Records	Details
1	H3K36me3	26	View
2	H3K27ac	17	View
3	H3K9me3	2	View
4	H3	1	View
5	H3K4me3	1	View

> Overlapped records detail between VIS [DVID: 4004068] and histone modification [H3K27ac]:

GSMID or ENCODE	Cell line	Cell type	Tissue type	Factor
GSM1234012	GM18526	Lymphoblastoid	Blood	H3K27ac [Search on ENCODE]
GSM1234013	GM18526	Lymphoblastoid	Blood	H3K27ac [Search on ENCODE]
GSM1234046	GM19099	Lymphoblastoid	Blood	H3K27ac [Search on ENCODE]
GSM1234047	GM19099	Lymphoblastoid	Blood	H3K27ac [Search on ENCODE]
GSM1234080	GM19238	Lymphoblastoid	Blood	H3K27ac [Search on ENCODE]
GSM1234081	GM19238	Lymphoblastoid	Blood	H3K27ac [Search on ENCODE]
GSM1234103	GM19239	Lymphoblastoid	Blood	H3K27ac [Search on ENCODE]
GSM1420859	None	Lymphoblastoid	None	H3K27ac [Search on ENCODE]
GSM1420864	GM19143	Lymphoblastoid	None	H3K27ac [Search on ENCODE]
GSM1550809	None	Lymphoblastoid	None	H3K27ac [Search on ENCODE]
GSM1550854	GM18853	Lymphoblastoid	None	H3K27ac [Search on ENCODE]
GSM1550863	GM18501	Lymphoblastoid	None	H3K27ac [Search on ENCODE]
GSM1550913	GM18861	Lymphoblastoid	None	H3K27ac [Search on ENCODE]
GSM1550924	GM19098	Lymphoblastoid	None	H3K27ac [Search on ENCODE]
GSM1550948	GM19130	Lymphoblastoid	None	H3K27ac [Search on ENCODE]
GSM1550999	GM18907	Lymphoblastoid	None	H3K27ac [Search on ENCODE]
GSM1551022	GM19143	Lymphoblastoid	None	H3K27ac [Search on ENCODE]

Contents
Description

Table Description

This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.

Overlap

An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.