Home
Virus
Gene
Disease
Dataset
Download
Help
 
HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4004068] Location [chr1: 10080429] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 H3K36me3 26 View
2 H3K27ac 17 View
3 H3K9me3 2 View
4 H3 1 View
5 H3K4me3 1 View


> Overlapped records detail between VIS [DVID: 4004068] and all histone modification :


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM958159 None Keratinocyte Foreskin H3K36me3 [Search on ENCODE]
GSM317595 None Proerythroblast Blood H3K36me3 [Search on ENCODE]
GSM621419 None Mesenchymal Stem Cell Bone Marrow H3K36me3 [Search on ENCODE]
GSM772810 None Neural Progenitor Cell Brain H3K9me3 [Search on ENCODE]
GSM1233900 GM12878 B Lymphocyte Blood H3K36me3 [Search on ENCODE]
GSM1233901 GM12878 B Lymphocyte Blood H3K36me3 [Search on ENCODE]
GSM1233923 GM12890 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1233942 GM12891 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1233943 GM12891 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234012 GM18526 Lymphoblastoid Blood H3K27ac [Search on ENCODE]
GSM1234013 GM18526 Lymphoblastoid Blood H3K27ac [Search on ENCODE]
GSM1234033 GM18951 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234046 GM19099 Lymphoblastoid Blood H3K27ac [Search on ENCODE]
GSM1234047 GM19099 Lymphoblastoid Blood H3K27ac [Search on ENCODE]
GSM1234051 GM19099 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234067 GM19193 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234080 GM19238 Lymphoblastoid Blood H3K27ac [Search on ENCODE]
GSM1234081 GM19238 Lymphoblastoid Blood H3K27ac [Search on ENCODE]
GSM1234086 GM19238 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234087 GM19238 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234103 GM19239 Lymphoblastoid Blood H3K27ac [Search on ENCODE]
GSM1234108 GM19239 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234152 GM2255 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234170 GM2588 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234188 GM2610 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234206 GM2630 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234228 MS1 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1314145 DND-41 T Lymphocyte Blood H3K36me3 [Search on ENCODE]
GSM945192 H7 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM788078 U2OS None Bone H3K9me3 [Search on ENCODE]
GSM1252276 None None Stomach H3K36me3 [Search on ENCODE]
GSM1252292 None None Stomach H3K36me3 [Search on ENCODE]
GSM1420859 None Lymphoblastoid None H3K27ac [Search on ENCODE]
GSM1420864 GM19143 Lymphoblastoid None H3K27ac [Search on ENCODE]
GSM1550809 None Lymphoblastoid None H3K27ac [Search on ENCODE]
GSM1550854 GM18853 Lymphoblastoid None H3K27ac [Search on ENCODE]
GSM1550863 GM18501 Lymphoblastoid None H3K27ac [Search on ENCODE]
GSM1550913 GM18861 Lymphoblastoid None H3K27ac [Search on ENCODE]
GSM1550924 GM19098 Lymphoblastoid None H3K27ac [Search on ENCODE]
GSM1550948 GM19130 Lymphoblastoid None H3K27ac [Search on ENCODE]
GSM1550999 GM18907 Lymphoblastoid None H3K27ac [Search on ENCODE]
GSM1551022 GM19143 Lymphoblastoid None H3K27ac [Search on ENCODE]
GSM1702537 None None Bone Marrow H3 [Search on ENCODE]
GSM2037512 None None Gastric Primary Sample H3K4me3 [Search on ENCODE]
GSM2280000 None Cardiomyocyte None H3K36me3 [Search on ENCODE]
GSM2507477 None iPSC None H3K36me3 [Search on ENCODE]
GSM772912 HUES64 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.