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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4003106] Location [chr1: 226376520] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 H3K36me3 22 View
2 H3K4me1 3 View
3 H3K4me2 1 View
4 H3K4me3 1 View


> Overlapped records detail between VIS [DVID: 4003106] and histone modification [H3K36me3]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1233876 GM10847 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1233900 GM12878 B Lymphocyte Blood H3K36me3 [Search on ENCODE]
GSM1233922 GM12890 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1233923 GM12890 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1233943 GM12891 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1233965 GM12892 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234033 GM18951 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234050 GM19099 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234068 GM19193 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234086 GM19238 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234087 GM19238 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234109 GM19239 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234152 GM2255 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234170 GM2588 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234188 GM2610 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234206 GM2630 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234228 MS1 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1654505 MCF-10A Epithelium Breast H3K36me3 [Search on ENCODE]
GSM1946472 T/C28a2 Chondrocyte None H3K36me3 [Search on ENCODE]
GSM2280023 None Cardiomyocyte None H3K36me3 [Search on ENCODE]
GSM2280000 None Cardiomyocyte None H3K36me3 [Search on ENCODE]
GSM2279976 None Cardiomyocyte None H3K36me3 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.