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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4002753] Location [chr1: 198671203] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 DNase 46 View
2 ATAC-seq 4 View


> Overlapped records detail between VIS [DVID: 4002753] and all chromatin accessibility :


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM701532 None Cortex Fetal Kidney DNase [Search on ENCODE]
GSM701519 None Cortex Fetal Kidney Left DNase [Search on ENCODE]
GSM701518 None None Fetal Renal Pelvis Right DNase [Search on ENCODE]
GSM701511 None Cortex Fetal Kidney DNase [Search on ENCODE]
GSM701494 None Cortex Fetal Kidney DNase [Search on ENCODE]
GSM701493 None B Lymphocyte Spleen DNase [Search on ENCODE]
GSM701492 None B Lymphocyte Spleen DNase [Search on ENCODE]
GSM665834 None Epithelium Kidney DNase [Search on ENCODE]
GSM665833 None Epithelium Fetal Kidney Right DNase [Search on ENCODE]
GSM595914 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM530660 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM530657 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM493386 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM493384 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM1024607 None Epithelium Fetal Kidney Right DNase [Search on ENCODE]
GSM1024608 None Epithelium Fetal Kidney DNase [Search on ENCODE]
GSM817211 None Cortex Fetal Kidney Left DNase [Search on ENCODE]
GSM817218 None Epithelium Fetal Renal Pelvis DNase [Search on ENCODE]
GSM817204 None Epithelium Fetal Renal Pelvis Right DNase [Search on ENCODE]
GSM817203 None Cortex Fetal Kidney Left DNase [Search on ENCODE]
GSM817209 None Epithelium Fetal Renal Pelvis Left DNase [Search on ENCODE]
GSM817202 None Cortex Fetal Kidney Right DNase [Search on ENCODE]
GSM817210 None Cortex Fetal Kidney Right DNase [Search on ENCODE]
GSM1102740 None Epithelium Fetal Kidney DNase [Search on ENCODE]
GSM1102737 None T Lymphocyte Cord blood DNase [Search on ENCODE]
GSM878662 None Epithelium Fetal Renal Pelvis DNase [Search on ENCODE]
GSM878667 None Cortex Fetal Kidney DNase [Search on ENCODE]
GSM878666 None Epithelium Fetal Kidney DNase [Search on ENCODE]
GSM1027342 None Epithelium Fetal Kidney DNase [Search on ENCODE]
GSM1027346 None Epithelium Fetal Kidney Right DNase [Search on ENCODE]
GSM1027315 None Epithelium Fetal Renal Pelvis DNase [Search on ENCODE]
GSM1027347 None Epithelium Fetal Kidney Left DNase [Search on ENCODE]
GSM1027317 None Epithelium Fetal Renal Pelvis DNase [Search on ENCODE]
GSM1027314 None Cortex Fetal Kidney DNase [Search on ENCODE]
GSM1027329 None Epithelium Fetal Kidney DNase [Search on ENCODE]
GSM1027336 None Epithelium Fetal Kidney Left DNase [Search on ENCODE]
GSM1027337 None Epithelium Fetal Kidney Right DNase [Search on ENCODE]
GSM817192 None Epithelium Fetal Renal Pelvis Right DNase [Search on ENCODE]
GSM817193 None Epithelium Fetal Renal Pelvis Left DNase [Search on ENCODE]
GSM1014525 None B Lymphocyte Blood DNase [Search on ENCODE]
GSM723022 None Haematopoietic Progenitor Cell Cord blood DNase [Search on ENCODE]
GSM1220604 None B Lymphocyte Spleen DNase [Search on ENCODE]
GSM1024765 None B Lymphocyte Blood DNase [Search on ENCODE]
GSM1581824 None Myeloid Cell None DNase [Search on ENCODE]
GSM1832756 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM1832757 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM1832758 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM1832759 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
ENCSR426IEA_1 KBM-7 Myeloblast Blood DNase [Search on ENCODE]
ENCSR426IEA_2 KBM-7 Myeloblast Blood DNase [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.