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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4002011] Location [chr1: 8478790] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 CTCF 27 View
2 RAD21 11 View
3 HNF4A 5 View
4 FOXA1 2 View
5 CREB1 2 View
6 TERC 2 View
7 STAG1 2 View
8 FAIRE 1 View
9 SMC3 1 View
10 POLR2A 1 View
11 FOXA2 1 View
12 JUND 1 View
13 SP1 1 View
14 HDAC2 1 View
15 HNF4G 1 View
16 MYBL2 1 View
17 RXRA 1 View
18 FOSL2 1 View
19 NR2F2 1 View
20 NR2F6 1 View
21 SMAD4 1 View


> Overlapped records detail between VIS [DVID: 4002011] and transcription factor binding site [CTCF]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM614630 HepG2 Epithelium Liver CTCF [Search on ENCODE]
GSM822276 GM19240 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM822277 GM19239 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM822299 GM12892 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM646334 H1 Embryonic Stem Cell Embryo CTCF [Search on ENCODE]
GSM646335 H1 Embryonic Stem Cell Embryo CTCF [Search on ENCODE]
GSM849302 GM12870 B Lymphocyte Blood CTCF [Search on ENCODE]
GSM1233934 GM12891 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234079 GM19238 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234145 GM2255 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234216 MS1 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234218 MS1 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM733672 H1 Embryonic Stem Cell Embryo CTCF [Search on ENCODE]
GSM1022633 GM12872 B Lymphocyte Blood CTCF [Search on ENCODE]
GSM822285 HeLa-S3 Epithelium Cervix CTCF [Search on ENCODE]
GSM822287 HepG2 Epithelium Liver CTCF [Search on ENCODE]
GSM749768 WERI-Rb-1 None Eye CTCF [Search on ENCODE]
GSM803419 H1 Embryonic Stem Cell Embryo CTCF [Search on ENCODE]
GSM803486 HepG2 Epithelium Liver CTCF [Search on ENCODE]
GSM489295 GM12892 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM489298 GM19240 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM489301 GM19239 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1267206 H1 Embryonic Stem Cell Embryo CTCF [Search on ENCODE]
GSM1267207 H1 Embryonic Stem Cell Embryo CTCF [Search on ENCODE]
GSM1267210 H1 Embryonic Stem Cell Embryo CTCF [Search on ENCODE]
GSM624078 HeLa Epithelium Cervix CTCF [Search on ENCODE]
GSM748539 HepG2 Epithelium Liver CTCF [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.