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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4001918] Location [chr2: 161208307] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 H3K4me1 73 View
2 H3K27ac 29 View
3 H3K4me2 2 View
4 H3K36me3 2 View
5 H3K9ac 1 View


> Overlapped records detail between VIS [DVID: 4001918] and histone modification [H3K27ac]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM646374 None Epithelium Mammary Gland H3K27ac [Search on ENCODE]
GSM1112825 HUES64 Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
GSM1154045 None Endothelial Cell Umbilical Vein H3K27ac [Search on ENCODE]
GSM1233936 GM12891 Lymphoblastoid Blood H3K27ac [Search on ENCODE]
GSM1273660 None Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
GSM1273670 None Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
GSM1226370 None Endothelial Cell Umbilical Vein H3K27ac [Search on ENCODE]
GSM1226371 None Endothelial Cell Umbilical Vein H3K27ac [Search on ENCODE]
GSM945853 HCT-116 None Colon H3K27ac [Search on ENCODE]
GSM733660 None Epithelium Mammary Gland H3K27ac [Search on ENCODE]
GSM1418963 IMR90 Fibroblast Lung H3K27ac [Search on ENCODE]
GSM1418964 IMR90 Fibroblast Lung H3K27ac [Search on ENCODE]
GSM1420887 GM19201 Lymphoblastoid None H3K27ac [Search on ENCODE]
GSM1652918 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM1663107 HT1080 None Connective Tissue H3K27ac [Search on ENCODE]
GSM1918565 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM1915113 IMR90 Fibroblast Lung H3K27ac [Search on ENCODE]
GSM2037787 HCC827 Epithelium Lung H3K27ac [Search on ENCODE]
GSM2066434 NCI-H2087 None Lung H3K27ac [Search on ENCODE]
GSM1970132 MRC5 Fibroblast Lung H3K27ac [Search on ENCODE]
GSM2309712 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM2309710 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM2667960 HCT-116 None HCT116 H3K27ac [Search on ENCODE]
GSM2877104 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM2877103 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM2550240 None Endothelial Cell None H3K27ac [Search on ENCODE]
GSM2258866 MB436 None Breast H3K27ac [Search on ENCODE]
GSM2809617 HCT-116 None Colon H3K27ac [Search on ENCODE]
GSM2571030 HCT-116 None HCT116 H3K27ac [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.