HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."

Show overlaps from virus related biological source

Factor Rank on this VIS	Factor Name	Overlapped Records	Details
1	H3K4me1	31	View
2	H3K27ac	25	View
3	H3K4me2	22	View
4	H3K4me3	13	View
5	H3K36me3	6	View
6	H3K9ac	3	View
7	H3K27me3	1	View
8	H3K9me2	1	View
9	H4K5ac	1	View

> Overlapped records detail between VIS [DVID: 4001504] and histone modification [H3K4me3]:

GSMID or ENCODE	Cell line	Cell type	Tissue type	Factor
GSM1252303	None	None	Stomach	H3K4me3 [Search on ENCODE]
GSM1252304	None	None	Stomach	H3K4me3 [Search on ENCODE]
GSM1252308	None	None	Stomach	H3K4me3 [Search on ENCODE]
GSM1647620	None	None	Liver	H3K4me3 [Search on ENCODE]
GSM1647623	None	None	Liver	H3K4me3 [Search on ENCODE]
GSM1918515	K562	Erythroblast	Bone Marrow	H3K4me3 [Search on ENCODE]
GSM1918518	K562	Erythroblast	Bone Marrow	H3K4me3 [Search on ENCODE]
GSM1918536	K562	Erythroblast	Bone Marrow	H3K4me3 [Search on ENCODE]
GSM2037511	None	None	Gastric Primary Sample	H3K4me3 [Search on ENCODE]
GSM2037509	None	None	Gastric Primary Sample	H3K4me3 [Search on ENCODE]
GSM2037496	None	None	Gastric Primary Sample	H3K4me3 [Search on ENCODE]
GSM2432954	D-341	None	None	H3K4me3 [Search on ENCODE]
GSM2644049	D1 ORL UVA	Hepatocyte	None	H3K4me3 [Search on ENCODE]

Contents
Description

Table Description

This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.

Overlap

An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.