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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4001504] Location [chr1: 8782419] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 H3K4me1 31 View
2 H3K27ac 25 View
3 H3K4me2 22 View
4 H3K4me3 13 View
5 H3K36me3 6 View
6 H3K9ac 3 View
7 H3K27me3 1 View
8 H3K9me2 1 View
9 H4K5ac 1 View


> Overlapped records detail between VIS [DVID: 4001504] and histone modification [H3K4me2]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM646362 HepG2 Epithelium Liver H3K4me2 [Search on ENCODE]
GSM575223 Caco-2 Epithelium Colon H3K4me2 [Search on ENCODE]
GSM575222 Caco-2 Epithelium Colon H3K4me2 [Search on ENCODE]
GSM733693 HepG2 Epithelium Liver H3K4me2 [Search on ENCODE]
GSM1297924 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1297933 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1297944 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1297949 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1297981 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1297984 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1297987 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1297996 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1298000 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1298005 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1298007 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1298010 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1298011 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1298016 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1298019 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1298020 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1298026 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1298035 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.