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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4001504] Location [chr1: 8782419] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 H3K4me1 31 View
2 H3K27ac 25 View
3 H3K4me2 22 View
4 H3K4me3 13 View
5 H3K36me3 6 View
6 H3K9ac 3 View
7 H3K27me3 1 View
8 H3K9me2 1 View
9 H4K5ac 1 View


> Overlapped records detail between VIS [DVID: 4001504] and histone modification [H3K4me1]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM669972 None Hepatocyte Liver H3K4me1 [Search on ENCODE]
GSM537706 None Hepatocyte Liver H3K4me1 [Search on ENCODE]
GSM798321 HepG2 Epithelium Liver H3K4me1 [Search on ENCODE]
GSM1252275 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252279 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252283 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252287 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252291 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252295 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252311 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252315 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252323 None None Stomach H3K4me1 [Search on ENCODE]
GSM772816 None Mesenchymal Stem Cell Adipose H3K4me1 [Search on ENCODE]
GSM2037514 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM2037508 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM2037506 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM2037505 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM2037503 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM2037500 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM1975185 YCC3 None Gastric Cancer Line H3K4me1 [Search on ENCODE]
GSM1975178 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM1975162 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM1975154 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM1969630 YCC3 None Gastric Cancer Line H3K4me1 [Search on ENCODE]
GSM1969623 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM1969607 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM1969599 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM2644048 D1 ORL UVA Hepatocyte None H3K4me1 [Search on ENCODE]
GSM2644051 None Hepatocyte None H3K4me1 [Search on ENCODE]
GSM2644054 None Hepatocyte None H3K4me1 [Search on ENCODE]
GSM2293414 None None Kidney H3K4me1 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.