Home
Virus
Gene
Disease
Dataset
Download
Help
 
HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4001504] Location [chr1: 8782419] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 H3K4me1 31 View
2 H3K27ac 25 View
3 H3K4me2 22 View
4 H3K4me3 13 View
5 H3K36me3 6 View
6 H3K9ac 3 View
7 H3K27me3 1 View
8 H3K9me2 1 View
9 H4K5ac 1 View


> Overlapped records detail between VIS [DVID: 4001504] and histone modification [H3K27ac]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1058765 None Epithelium Fetal Large Intestine H3K27ac [Search on ENCODE]
GSM1112808 None Epithelium Liver H3K27ac [Search on ENCODE]
GSM1112809 None Epithelium Liver H3K27ac [Search on ENCODE]
GSM1127173 None None Left Ventricle H3K27ac [Search on ENCODE]
GSM1252274 None None Stomach H3K27ac [Search on ENCODE]
GSM1252320 None None Stomach H3K27ac [Search on ENCODE]
GSM1252324 None None Stomach H3K27ac [Search on ENCODE]
GSM1670897 HepG2 Epithelium Liver H3K27ac [Search on ENCODE]
GSM1918559 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM1918564 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM2037502 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM2037499 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM2037491 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM2037490 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM1975203 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM1975182 FU97 None Gastric Cancer Line H3K27ac [Search on ENCODE]
GSM1969648 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM1969627 FU97 None Gastric Cancer Line H3K27ac [Search on ENCODE]
GSM2483421 MCF-7 Epithelium Breast H3K27ac [Search on ENCODE]
GSM2432975 D-341 Medulloblastoma Cerebellum H3K27ac [Search on ENCODE]
GSM2432955 D-341 None Brain H3K27ac [Search on ENCODE]
GSM2432947 D283 Med None None H3K27ac [Search on ENCODE]
GSM2644050 D1 ORL UVA Hepatocyte None H3K27ac [Search on ENCODE]
GSM2644053 None Hepatocyte None H3K27ac [Search on ENCODE]
GSM2644056 None Hepatocyte None H3K27ac [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.