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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4001504] Location [chr1: 8782419] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 H3K4me1 31 View
2 H3K27ac 25 View
3 H3K4me2 22 View
4 H3K4me3 13 View
5 H3K36me3 6 View
6 H3K9ac 3 View
7 H3K27me3 1 View
8 H3K9me2 1 View
9 H4K5ac 1 View


> Overlapped records detail between VIS [DVID: 4001504] and all histone modification :


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM669972 None Hepatocyte Liver H3K4me1 [Search on ENCODE]
GSM646362 HepG2 Epithelium Liver H3K4me2 [Search on ENCODE]
GSM575223 Caco-2 Epithelium Colon H3K4me2 [Search on ENCODE]
GSM537706 None Hepatocyte Liver H3K4me1 [Search on ENCODE]
GSM575222 Caco-2 Epithelium Colon H3K4me2 [Search on ENCODE]
GSM1058765 None Epithelium Fetal Large Intestine H3K27ac [Search on ENCODE]
GSM1112808 None Epithelium Liver H3K27ac [Search on ENCODE]
GSM1112809 None Epithelium Liver H3K27ac [Search on ENCODE]
GSM1127173 None None Left Ventricle H3K27ac [Search on ENCODE]
GSM798321 HepG2 Epithelium Liver H3K4me1 [Search on ENCODE]
GSM733693 HepG2 Epithelium Liver H3K4me2 [Search on ENCODE]
GSM1252274 None None Stomach H3K27ac [Search on ENCODE]
GSM1252275 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252276 None None Stomach H3K36me3 [Search on ENCODE]
GSM1252279 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252280 None None Stomach H3K36me3 [Search on ENCODE]
GSM1252283 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252284 None None Stomach H3K36me3 [Search on ENCODE]
GSM1252287 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252288 None None Stomach H3K36me3 [Search on ENCODE]
GSM1252291 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252292 None None Stomach H3K36me3 [Search on ENCODE]
GSM1252295 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252296 None None Stomach H3K36me3 [Search on ENCODE]
GSM1252299 None None Stomach H3K27me3 [Search on ENCODE]
GSM1252303 None None Stomach H3K4me3 [Search on ENCODE]
GSM1252304 None None Stomach H3K4me3 [Search on ENCODE]
GSM1252308 None None Stomach H3K4me3 [Search on ENCODE]
GSM1252311 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252315 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252320 None None Stomach H3K27ac [Search on ENCODE]
GSM1252323 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252324 None None Stomach H3K27ac [Search on ENCODE]
GSM1297924 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1297933 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1297944 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1297949 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1297981 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1297984 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1297987 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1297996 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1298000 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1298005 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1298007 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1298010 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1298011 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1298016 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1298019 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1298020 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1298026 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1298035 None T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1647620 None None Liver H3K4me3 [Search on ENCODE]
GSM1647623 None None Liver H3K4me3 [Search on ENCODE]
GSM1670897 HepG2 Epithelium Liver H3K27ac [Search on ENCODE]
GSM1918515 K562 Erythroblast Bone Marrow H3K4me3 [Search on ENCODE]
GSM1918518 K562 Erythroblast Bone Marrow H3K4me3 [Search on ENCODE]
GSM1918536 K562 Erythroblast Bone Marrow H3K4me3 [Search on ENCODE]
GSM1918559 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM1918564 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM1702515 None None Bone Marrow H3K9ac [Search on ENCODE]
GSM1702528 None None Bone Marrow H3K9ac [Search on ENCODE]
GSM1702553 None None Bone Marrow H3K9me2 [Search on ENCODE]
GSM2037502 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM2037499 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM2037491 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM2037490 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM1975203 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM1975182 FU97 None Gastric Cancer Line H3K27ac [Search on ENCODE]
GSM1969648 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM1969627 FU97 None Gastric Cancer Line H3K27ac [Search on ENCODE]
GSM2483421 MCF-7 Epithelium Breast H3K27ac [Search on ENCODE]
GSM2432975 D-341 Medulloblastoma Cerebellum H3K27ac [Search on ENCODE]
GSM2432955 D-341 None Brain H3K27ac [Search on ENCODE]
GSM2432947 D283 Med None None H3K27ac [Search on ENCODE]
GSM772816 None Mesenchymal Stem Cell Adipose H3K4me1 [Search on ENCODE]
GSM2037514 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM2037511 None None Gastric Primary Sample H3K4me3 [Search on ENCODE]
GSM2037509 None None Gastric Primary Sample H3K4me3 [Search on ENCODE]
GSM2037508 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM2037506 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM2037505 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM2037503 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM2037500 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM2037496 None None Gastric Primary Sample H3K4me3 [Search on ENCODE]
GSM1975185 YCC3 None Gastric Cancer Line H3K4me1 [Search on ENCODE]
GSM1975178 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM1975162 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM1975154 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM1969630 YCC3 None Gastric Cancer Line H3K4me1 [Search on ENCODE]
GSM1969623 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM1969607 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM1969599 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM2360952 Huh7 Epithelium Liver H4K5ac [Search on ENCODE]
GSM2360949 Huh7 Epithelium Liver H3K9ac [Search on ENCODE]
GSM2432954 D-341 None None H3K4me3 [Search on ENCODE]
GSM2644049 D1 ORL UVA Hepatocyte None H3K4me3 [Search on ENCODE]
GSM2644048 D1 ORL UVA Hepatocyte None H3K4me1 [Search on ENCODE]
GSM2644050 D1 ORL UVA Hepatocyte None H3K27ac [Search on ENCODE]
GSM2644051 None Hepatocyte None H3K4me1 [Search on ENCODE]
GSM2644053 None Hepatocyte None H3K27ac [Search on ENCODE]
GSM2644054 None Hepatocyte None H3K4me1 [Search on ENCODE]
GSM2644056 None Hepatocyte None H3K27ac [Search on ENCODE]
GSM2293414 None None Kidney H3K4me1 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.