Home
Virus
Gene
Disease
Dataset
Download
Help
 
HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000049] Location [chr1: 8510541] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 DNase 387 View
2 ATAC-seq 55 View


> Overlapped records detail between VIS [DVID: 4000049] and chromatin accessibility [ATAC-seq]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1565735 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM1484788 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2048321 None Th17 Tonsil ATAC-seq [Search on ENCODE]
GSM1662258 None Fibroblast None ATAC-seq [Search on ENCODE]
GSM1662259 None Fibroblast None ATAC-seq [Search on ENCODE]
GSM1662260 None Fibroblast None ATAC-seq [Search on ENCODE]
GSM1662261 None Fibroblast None ATAC-seq [Search on ENCODE]
GSM1832757 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM1832758 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2243040 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM2243039 None Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243038 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM2243037 None Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243033 CAL-1 Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2174882 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174881 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174880 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174878 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174877 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174876 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174875 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2098983 HFF Fibroblast Foreskin ATAC-seq [Search on ENCODE]
GSM2098982 HFF Fibroblast Foreskin ATAC-seq [Search on ENCODE]
GSM2098981 HFF Fibroblast Foreskin ATAC-seq [Search on ENCODE]
GSM2098980 HFF Fibroblast Foreskin ATAC-seq [Search on ENCODE]
GSM2098979 HFF Fibroblast Foreskin ATAC-seq [Search on ENCODE]
GSM2241148 T47D Epithelium Mammary Gland ATAC-seq [Search on ENCODE]
GSM2241147 T47D Epithelium Mammary Gland ATAC-seq [Search on ENCODE]
GSM2306498 None Th2 None ATAC-seq [Search on ENCODE]
GSM2306492 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2306491 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2285682 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2285650 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2285649 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2285636 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2285572 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2365855 None melanoma None ATAC-seq [Search on ENCODE]
GSM2365848 None Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2365847 None Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM1876030 None None Artery ATAC-seq [Search on ENCODE]
GSM1876031 None None Artery ATAC-seq [Search on ENCODE]
GSM1876025 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876024 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876027 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876026 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876021 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876023 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876022 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876028 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM2401442 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2401443 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2977486 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2977487 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2898847 None Cardiomyocyte None ATAC-seq [Search on ENCODE]
GSM2430672 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.