HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000872] Location [chr1: 43844333] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 CEBPB 12 View
2 GATA3 10 View
3 HNF4A 4 View
4 SPI1 4 View
5 EP300 4 View
6 POLR2A 4 View
7 JUN 3 View
8 NR3C1 3 View
9 CEBPG 2 View
10 VDR 2 View
11 BRD4 2 View
12 RAD21 2 View
13 YAP1 2 View
14 STAT3 2 View
15 KDM5B 1 View
16 JMJD1C 1 View
17 CDX2 1 View
18 ATF3 1 View
19 NR2F6 1 View
20 NR2F1 1 View
21 PPARG 1 View
22 NR1H3 1 View
23 TFAP4 1 View
24 NR0B1 1 View
25 PRMT5 1 View
26 SS18 1 View
27 SMARCB1 1 View
28 SMC1A 1 View
29 REPIN1 1 View
30 ETV7 1 View
31 MED12 1 View
32 MSX1 1 View
33 CAMTA2 1 View
34 MYC 1 View
35 ZBTB7B 1 View
36 LHX2 1 View
37 JUND 1 View
38 RFX2 1 View
39 CLOCK 1 View
40 RUNX2 1 View
41 NIPBL 1 View
42 E2F8 1 View
43 SMC3 1 View
44 KLF5 1 View
45 ATF2 1 View
46 E2F3 1 View
47 ETV5 1 View
48 IRF1 1 View
49 EOMES 1 View
50 PROX1 1 View


> Click to view overlapped records detail between VIS [DVID: 4000872] and all transcription factor binding site


Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.