HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."

Show overlaps from virus related biological source

Factor Rank on this VIS	Factor Name	Overlapped Records	Details
1	SPI1	30	View
2	STAG1	18	View
3	POLR2A	6	View
4	MAX	3	View
5	SPIB	3	View
6	IRF1	3	View
7	CTCF	3	View
8	EBF1	2	View
9	TBX21	2	View
10	TCF4	2	View
11	KMT2A	2	View
12	SND1	2	View
13	MED1	1	View
14	CDK9	1	View
15	SMC1A	1	View
16	MYC	1	View
17	BRD4	1	View
18	RBPJ	1	View
19	KDM1A	1	View
20	EBNA2	1	View
21	SOX2	1	View
22	IKZF1	1	View
23	MLLT1	1	View
24	MTA2	1	View
25	CDK8	1	View
26	TRIM28	1	View
27	RUNX1	1	View
28	MTA3	1	View
29	FOXM1	1	View
30	RUNX3	1	View
31	ATF2	1	View
32	STAT1	1	View
33	IRF4	1	View
34	EBNA3	1	View

> Click to view overlapped records detail between VIS [DVID: 4000363] and all transcription factor binding site

Contents
Description

Table Description

This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.

Overlap

An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.