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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000049] Location [chr1: 8510541] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 STAG1 15 View
2 EP300 10 View
3 H2AZ 9 View
4 NR3C1 6 View
5 POLR2A 4 View
6 FOXA1 3 View
7 KLF15 3 View
8 KMT2A 3 View
9 AR 3 View
10 NFIC 2 View
11 NIPBL 2 View
12 MAX 2 View
13 JUND 2 View
14 CREBBP 2 View
15 FLI1 2 View
16 E2F7 2 View
17 PBX3 1 View
18 BRD4 1 View
19 BHLHE40 1 View
20 IKZF1 1 View
21 CTCF 1 View
22 BCLAF1 1 View
23 RAG2 1 View
24 YAP1 1 View
25 MEF2B 1 View
26 FOXA2 1 View
27 KLF11 1 View
28 TCF12 1 View
29 GATA3 1 View
30 RXRA 1 View
31 MEF2A 1 View
32 FOXM1 1 View
33 TEAD4 1 View
34 FOSL2 1 View
35 YY1 1 View
36 MXI1 1 View
37 RAD21 1 View
38 CEBPB 1 View
39 TERF1 1 View
40 RNF2 1 View
41 RUNX1 1 View
42 POU5F1 1 View


> Click to view overlapped records detail between VIS [DVID: 4000049] and all transcription factor binding site


Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.