HBV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 1400002] Location [chr6: 16439338] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 POLR2A 17 View
2 ERG 6 View
3 MAX 5 View
4 BRD4 5 View
5 EP300 4 View
6 CTCF 4 View
7 MED1 4 View
8 E2F1 3 View
9 NIPBL 3 View
10 CBFB 3 View
11 RUNX1 3 View
12 YY1 2 View
13 JUN 2 View
14 NFE2L1 2 View
15 ZNF740 2 View
16 GATA2 2 View
17 TRIM24 2 View
18 ZNF143 2 View
19 HDAC2 2 View
20 HDAC3 2 View
21 FGFR1 2 View
22 SMC1A 2 View
23 CDK9 2 View
24 TERC 2 View
25 FOXA2 2 View
26 NFE2L2 1 View
27 BTAF1 1 View
28 SMC3 1 View
29 SMAD1 1 View
30 GATA1 1 View
31 NFKB2 1 View
32 JMJD6 1 View
33 MBD3 1 View
34 ATF7IP 1 View
35 SP1 1 View
36 GAPDH 1 View
37 NFE2 1 View
38 BCL3 1 View
39 KDM2B 1 View
40 CHD8 1 View
41 RARA 1 View
42 SPI1 1 View
43 MAZ 1 View
44 REST 1 View
45 E2F6 1 View
46 FOSL2 1 View
47 GABPA 1 View
48 CEBPD 1 View
49 BACH1 1 View
50 PBX3 1 View


> Click to view overlapped records detail between VIS [DVID: 1400002] and all transcription factor binding site


Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.