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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 87642624-87642625 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM640691 H9 Embryonic Stem Cell Embryo EOMES [Search on ENCODE]
GSM700356 HEK293 Epithelium Embryonic Kidney TRIM28 [Search on ENCODE]
GSM614634 HepG2 Epithelium Liver CEBPA [Search on ENCODE]
GSM614633 HepG2 Epithelium Liver CEBPA [Search on ENCODE]
GSM614632 HepG2 Epithelium Liver HNF4A [Search on ENCODE]
GSM614626 HepG2 Epithelium Liver STAG1 [Search on ENCODE]
GSM700366 U2OS None Bone TRIM28 [Search on ENCODE]
GSM881712 NCCIT None Embryo POU5F1 [Search on ENCODE]
GSM1273052 None B Lymphocyte None EBNA3C [Search on ENCODE]
GSM1273053 None B Lymphocyte None EBNA3C [Search on ENCODE]
GSM935592 HEK293 Epithelium Embryonic Kidney TRIM28 [Search on ENCODE]
GSM935622 HepG2 Epithelium Liver CEBPB [Search on ENCODE]
GSM935275 HepG2 Epithelium Liver ARID3A [Search on ENCODE]
GSM935493 HepG2 Epithelium Liver CEBPB [Search on ENCODE]
GSM935542 HepG2 Epithelium Liver SMC3 [Search on ENCODE]
GSM935587 U2OS None Bone TRIM28 [Search on ENCODE]
GSM1010841 ECC-1 Epithelium Endometrium REST [Search on ENCODE]
GSM803499 HepG2 Epithelium Liver EP300 [Search on ENCODE]
GSM803403 HepG2 Epithelium Liver FOXA2 [Search on ENCODE]
GSM803336 HepG2 Epithelium Liver TCF12 [Search on ENCODE]
GSM1010777 HepG2 Epithelium Liver CEBPD [Search on ENCODE]
GSM803500 HepG2 Epithelium Liver JUND [Search on ENCODE]
GSM1010778 HepG2 Epithelium Liver CEBPB [Search on ENCODE]
GSM803507 HepG2 Epithelium Liver SP1 [Search on ENCODE]
GSM803493 HepG2 Epithelium Liver HDAC2 [Search on ENCODE]
GSM1010875 HepG2 Epithelium Liver TEAD4 [Search on ENCODE]
GSM803404 HepG2 Epithelium Liver HNF4G [Search on ENCODE]
GSM1010741 HepG2 Epithelium Liver NFIC [Search on ENCODE]
GSM1010876 HepG2 Epithelium Liver MYBL2 [Search on ENCODE]
GSM803452 HepG2 Epithelium Liver RXRA [Search on ENCODE]
GSM803451 HepG2 Epithelium Liver FOSL2 [Search on ENCODE]
GSM1010865 HepG2 Epithelium Liver MAX [Search on ENCODE]
GSM1010809 HepG2 Epithelium Liver ZEB1 [Search on ENCODE]
GSM1010810 HepG2 Epithelium Liver NR2F2 [Search on ENCODE]
GSM1010740 HepG2 Epithelium Liver MBD4 [Search on ENCODE]
GSM803517 HepG2 Epithelium Liver RAD21 [Search on ENCODE]
GSM1010784 HepG2 Epithelium Liver REST [Search on ENCODE]
GSM1010786 PFSK-1 Neuron Brain REST [Search on ENCODE]
GSM1010735 SK-N-SH Neuroblastoma cell Brain REST [Search on ENCODE]
GSM1505704 HUES64 Embryonic Stem Cell Embryo OTX2 [Search on ENCODE]
GSM791411 LS180 Epithelium Colon CEBPB [Search on ENCODE]
GSM791412 LS180 Epithelium Colon CEBPB [Search on ENCODE]
GSM1861920 HepG2 Epithelium Liver RAD21 [Search on ENCODE]
GSM1861922 HepG2 Epithelium Liver RAD21 [Search on ENCODE]
GSM1861923 HepG2 Epithelium Liver RAD21 [Search on ENCODE]
GSM1861927 HepG2 Epithelium Liver GABPA [Search on ENCODE]
GSM1861936 HepG2 Epithelium Liver ATF1 [Search on ENCODE]
GSM1817181 None Neural crest cell Cranial EP300 [Search on ENCODE]
GSM1817183 None Neural crest cell Cranial EP300 [Search on ENCODE]
GSM1817190 None Neural crest cell Cranial NR2F1 [Search on ENCODE]
GSM1817193 None Neural crest cell Cranial NR2F1 [Search on ENCODE]
GSM1817197 None Neural crest cell Cranial TFAP2A [Search on ENCODE]
GSM1817200 None Neural crest cell Cranial TFAP2A [Search on ENCODE]
ENCSR017QBI_2 HEK293 Epithelium Embryonic Kidney ZNF600 [Search on ENCODE]
ENCSR054FKH_1 HepG2 Epithelium Liver RAD21 [Search on ENCODE]
ENCSR054FKH_2 HepG2 Epithelium Liver RAD21 [Search on ENCODE]
ENCSR103SZL_1 HepG2 Epithelium Liver TFAP4 [Search on ENCODE]
ENCSR103SZL_2 HepG2 Epithelium Liver TFAP4 [Search on ENCODE]
ENCSR253OON_1 HepG2 Epithelium Liver ATF1 [Search on ENCODE]
ENCSR260UJI_1 HepG2 Epithelium Liver MBD1_isoform2 [Search on ENCODE]
ENCSR269TNX_1 HepG2 Epithelium Liver GABP [Search on ENCODE]
ENCSR331ORD_1 HepG2 Epithelium Liver CREB1 [Search on ENCODE]
ENCSR331ORD_2 HepG2 Epithelium Liver CREB1 [Search on ENCODE]
ENCSR416QLJ_1 K562 Erythroblast Bone Marrow CEBPB [Search on ENCODE]
ENCSR416QLJ_2 K562 Erythroblast Bone Marrow CEBPB [Search on ENCODE]
ENCSR444LIN_1 HepG2 Epithelium Liver TCF7 [Search on ENCODE]
ENCSR444LIN_2 HepG2 Epithelium Liver TCF7 [Search on ENCODE]
ENCSR445ACU_1 HepG2 Epithelium Liver SOX13 [Search on ENCODE]
ENCSR518WPL_1 HepG2 Epithelium Liver NR2F6 [Search on ENCODE]
ENCSR518WPL_2 HepG2 Epithelium Liver NR2F6 [Search on ENCODE]
ENCSR528PSI_2 HepG2 Epithelium Liver HLF [Search on ENCODE]
ENCSR571PDN_2 HepG2 Epithelium Liver SSRP1 [Search on ENCODE]
ENCSR590CNM_2 HepG2 Epithelium Liver GATA4 [Search on ENCODE]
ENCSR656JZL_2 HepG2 Epithelium Liver HHEX [Search on ENCODE]
ENCSR714YZG_1 HepG2 Epithelium Liver ETV4 [Search on ENCODE]
ENCSR714YZG_2 HepG2 Epithelium Liver ETV4 [Search on ENCODE]
ENCSR800QIT_2 HepG2 Epithelium Liver HNF1A [Search on ENCODE]
ENCSR819WZE_1 HepG2 Epithelium Liver CBX1 [Search on ENCODE]
ENCSR896UBV_1 HEK293 Epithelium Embryonic Kidney REST [Search on ENCODE]
ENCSR896UBV_2 HEK293 Epithelium Embryonic Kidney REST [Search on ENCODE]
ENCSR903ELW_1 HepG2 Epithelium Liver CREM [Search on ENCODE]
ENCSR903ELW_2 HepG2 Epithelium Liver CREM [Search on ENCODE]
GSM1919987 CFPAC-1 None Pancreatic ductal FOXA1 [Search on ENCODE]
GSM1919984 CFPAC-1 None Pancreatic ductal KLF5 [Search on ENCODE]
GSM1574274 CFPAC-1 None Pancreatic ductal FOXA1 [Search on ENCODE]
GSM2029581 ZR-75-30 None None EP300 [Search on ENCODE]
GSM2029580 ZR-75-30 None None EP300 [Search on ENCODE]
GSM1700641 NCI-H82 None None ASCL1 [Search on ENCODE]
GSM2040029 HepG2 hepatocellular carcinoma None MED1 [Search on ENCODE]
GSM2040025 HepG2 hepatocellular carcinoma None MED1 [Search on ENCODE]
GSM2040024 HepG2 hepatocellular carcinoma None NIPBL [Search on ENCODE]
GSM1661790 A375 Melanoma Cell None POLR2A [Search on ENCODE]
GSM803432 HepG2 Epithelium Liver FOXA1 [Search on ENCODE]
GSM803461 HepG2 Epithelium Liver FOXA1 [Search on ENCODE]
GSM803460 HepG2 Epithelium Liver HNF4A [Search on ENCODE]
GSM2432983 D283 Med None None NEUROD1 [Search on ENCODE]
GSM2432982 D283 Med None None NEUROD1 [Search on ENCODE]
GSM2432981 D283 Med None None OTX2 [Search on ENCODE]
GSM2432980 D283 Med None None OTX2 [Search on ENCODE]
GSM2432979 D-341 None None NEUROD1 [Search on ENCODE]
GSM2432978 D-341 None None NEUROD1 [Search on ENCODE]
GSM2432977 D-341 None None NEUROD1 [Search on ENCODE]
GSM2432973 D-341 None None OTX2 [Search on ENCODE]
GSM2432971 D-341 None None OTX2 [Search on ENCODE]
GSM2432969 D-341 None None OTX2 [Search on ENCODE]
GSM2432967 D-341 None None OTX2 [Search on ENCODE]
GSM2432964 D-341 None None OTX2 [Search on ENCODE]
GSM2432962 D-341 None None OTX2 [Search on ENCODE]
GSM2432960 D-341 None None OTX2 [Search on ENCODE]
GSM2432958 D-341 None None OTX2 [Search on ENCODE]
GSM2432952 D-341 None None NEUROD1 [Search on ENCODE]
GSM2432951 D-341 None None OTX2 [Search on ENCODE]
GSM2432950 D-341 None None OTX2 [Search on ENCODE]
GSM2432944 D283 Med None None NEUROD1 [Search on ENCODE]
GSM2432943 D283 Med None None OTX2 [Search on ENCODE]
GSM2432942 D283 Med None None OTX2 [Search on ENCODE]
GSM2574781 HepG2 Epithelium Liver ARID3A [Search on ENCODE]
GSM2574765 HepG2 Epithelium Liver ZMYM3 [Search on ENCODE]
GSM2466686 LOUCY None Blood MYB [Search on ENCODE]
GSM2574756 HepG2 Epithelium Liver L3MBTL4 [Search on ENCODE]
GSM2436677 A673 Polygonal Muscle FLI1 [Search on ENCODE]
GSM2436676 A673 Polygonal Muscle FLI1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.