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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 87642624-87642625 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1102783 None None Fetal Stomach H3K27ac [Search on ENCODE]
GSM997249 HUES64 Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
GSM997250 HUES48 Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
GSM646362 HepG2 Epithelium Liver H3K4me2 [Search on ENCODE]
GSM956018 H1 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM1013149 None None Pancreas H3K4me1 [Search on ENCODE]
GSM883664 None None Colon Crypt H3K4me1 [Search on ENCODE]
GSM1233898 GM12878 B Lymphocyte Blood H3K27me3 [Search on ENCODE]
GSM1234126 GM19240 Lymphoblastoid Blood H3K27me3 [Search on ENCODE]
GSM1254200 OCI-Ly4 B Lymphocyte Bone Marrow H3K27ac [Search on ENCODE]
GSM1273645 H7 Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
GSM1273650 None None Endoderm H3K27ac [Search on ENCODE]
GSM1273653 None Endoderm Cell Embryo H3K4me2 [Search on ENCODE]
GSM1273655 None Endoderm Cell Embryo H3K27ac [Search on ENCODE]
GSM733693 HepG2 Epithelium Liver H3K4me2 [Search on ENCODE]
GSM1517571 A673 Polygonal Muscle H3K27ac [Search on ENCODE]
GSM1517573 A673 Polygonal Muscle H3K27ac [Search on ENCODE]
GSM1589470 MDA-MB-468 Epithelium Mammary Gland H3K27ac [Search on ENCODE]
GSM1316300 CyT49 Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
GSM1316301 CyT49 Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
GSM1316307 CyT49 Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
GSM1316308 CyT49 Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
GSM1316336 CyT49 Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
GSM790214 EWS502 Small Round Tumor Cell None H3K4me2 [Search on ENCODE]
GSM854151 TEX Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM1782704 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM1652918 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM1817151 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM1817152 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM1817153 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM1817154 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM1817155 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM1817156 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM1817157 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM1817158 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM1817159 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM1817160 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM1817161 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM1918562 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM1918569 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM1918575 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM1918576 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM1862996 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM2054696 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
ENCSR086YIH_2 MM.1S B Lymphoblast Blood H3K4me2 [Search on ENCODE]
ENCSR301AEA_2 None Neuron None H3K4me1 [Search on ENCODE]
GSM753426 H1 Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
ENCSR758OEC_2 MM.1S B Lymphoblast Blood H3K27ac [Search on ENCODE]
ENCSR955IXZ_1 KMS11 None None H3K27ac [Search on ENCODE]
ENCSR955IXZ_2 KMS11 None None H3K27ac [Search on ENCODE]
ENCSR955IXZ_3 KMS11 None None H3K27ac [Search on ENCODE]
GSM2243113 None rhabdomyosarcoma None H3K27ac [Search on ENCODE]
GSM1922973 None Neurosphere None H3K27ac [Search on ENCODE]
GSM2432974 D-341 Medulloblastoma Cerebellum H3K27ac [Search on ENCODE]
GSM2432961 D-341 Medulloblastoma Cerebellum H3K27ac [Search on ENCODE]
GSM2432955 D-341 None Brain H3K27ac [Search on ENCODE]
GSM2360941 Huh7 Epithelium Liver H3K27ac [Search on ENCODE]
GSM2214085 CTR rhabdomyosarcoma None H3K27ac [Search on ENCODE]
GSM1922078 None Free cell None H3K27ac [Search on ENCODE]
GSM2309712 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM2309711 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM2309710 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM1844451 Kasumi-1 Myeloblast Blood H3K4me2 [Search on ENCODE]
GSM1844450 Kasumi-1 Myeloblast Blood H3K4me2 [Search on ENCODE]
GSM1844449 Kasumi-1 Myeloblast Blood H3K4me2 [Search on ENCODE]
GSM2120705 SH-SY5Y Neuroblastoma cell None H3K4me1 [Search on ENCODE]
GSM2120700 None Neuroblastoma cell None H3K4me1 [Search on ENCODE]
GSM2058061 None None Colon Crypt H3K4me1 [Search on ENCODE]
GSM2360950 Huh7 Epithelium Liver H3K9ac [Search on ENCODE]
GSM2360949 Huh7 Epithelium Liver H3K9ac [Search on ENCODE]
GSM2360944 Huh7 Epithelium Liver H3K36ac [Search on ENCODE]
GSM2214107 Rh4 rhabdomyosarcoma None H3K4me1 [Search on ENCODE]
GSM2550219 None Stem cell None H3K27ac [Search on ENCODE]
GSM2877104 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM2664034 Ishikawa Epithelium Uterus H3K27ac [Search on ENCODE]
GSM2550247 None Stem cell None H3K27ac [Search on ENCODE]
GSM2550200 None Endothelial Cell None H3 [Search on ENCODE]
GSM2550226 None Stem cell None H3K27ac [Search on ENCODE]
GSM2476342 None Melanocyte Foreskin H3K4me1 [Search on ENCODE]
GSM2476344 501-Mel melanoma None H3K4me1 [Search on ENCODE]
GSM2550184 None Stem cell None H3K27ac [Search on ENCODE]
GSM663427 H1 Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
GSM2877112 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.